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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   SIG5B   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like 
 gma-r.7   SIG5B   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like 
 gma-m.5   SIG5B   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like 
 gma-u.5   100811515   RNA polymerase sigma factor rpoD-like 
 gma-u.5   100796580   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 gma-u.5   100776369   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 mtr-u.5   11428191   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 ppo-u.5   18103620   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 ppo-u.5   18105512   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 ath-u.5   SIGE   sigma factor E 
 vvi-u.5   100250120   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 sly-u.5   101252660   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 osa-u.5   4339759   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 zma-u.5   103630810   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to SIG5B (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIG5B (gma-u.5 coexpression data)

CoexMap"100812580"


gmaSIG5B | Entrez gene ID : 100812580      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 6 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (123 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein NP_001276145.2 [sequence] [blastp]
NP_001336364.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 3,  chlo_mito 3  (predict for NP_001276145.2)
chlo 6,  cyto 3,  chlo_mito 3  (predict for NP_001336364.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001276145.2)
chlo 5  (predict for NP_001336364.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
SIG5B
gma-r.7
for
SIG5B
gma-m.5
for
SIG5B
gma-u.5
for
100811515
gma-u.5
for
100796580
gma-u.5
for
100776369
mtr-u.5
for
11428191
ppo-u.5
for
18103620
ppo-u.5
for
18105512
ath-u.5
for
SIGE
vvi-u.5
for
100250120
sly-u.5
for
101252660
osa-u.5
for
4339759
zma-u.5
for
103630810


Ortholog ID: 7735
Species gma gma mtr ppo ppo ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol SIG5B LOC100796580 LOC11428191 LOC18103620 LOC18105512 SIGE LOC103865831 LOC103874286 LOC100250120 LOC107929486 LOC107947260 LOC106428449 LOC106366017 LOC102609535 LOC101252660 LOC102586954 LOC107795222 LOC107829846 LOC4339759 LOC103630810 LOC123070039 LOC123148959 LOC123452201 LOC8066537 LOC100821196
Function* RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial sigma factor E RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00999 Biosynthesis of various plant secondary metabolites 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100812580 100796580 11428191 18103620 18105512 832477 103865831 103874286 100250120 107929486 107947260 106428449 106366017 102609535 101252660 102586954 107795222 107829846 4339759 103630810 123070039 123148959 123452201 8066537 100821196
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