ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100813165	glycine-rich RNA-binding protein 3, mitochondrial
gma-r.7	100813165	glycine-rich RNA-binding protein 3, mitochondrial
gma-u.5	113001701	glycine-rich RNA-binding protein 3, mitochondrial
gma-u.5	100814490	heterogeneous nuclear ribonucleoprotein A3
gma-u.5	100801373	heterogeneous nuclear ribonucleoprotein A3 homolog 2
mtr-u.5	11427003	heterogeneous nuclear ribonucleoprotein A1
mtr-u.5	25495139	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7485125	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7496843	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	AT3G13224	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G40490	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103849754	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103863998	heterogeneous nuclear ribonucleoprotein A3 homolog 2
vvi-u.5	100265210	heterogeneous nuclear ribonucleoprotein 27C-like
vvi-u.5	100246013	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100240900	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954751	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954030	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107950061	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106377523	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106446166	heterogeneous nuclear ribonucleoprotein A1-like 2
bna-r.1	106391017	heterogeneous nuclear ribonucleoprotein 1-like
cit-r.1	102618321	uncharacterized LOC102618321
sly-u.5	101263479	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101265253	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102579349	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102605795	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102605451	heterogeneous nuclear ribonucleoprotein A1-like
nta-r.1	107765935	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107794577	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107799939	heterogeneous nuclear ribonucleoprotein 1-like
osa-u.5	4345910	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4345254	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	103645111	glycine-rich RNA-binding protein 3, mitochondrial
zma-u.5	103639292	heterogeneous nuclear ribonucleoprotein 1-like
zma-u.5	100217268	uncharacterized LOC100217268
tae-r.2	123165488	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123138129	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123128276	RNA-binding protein Musashi homolog 2
hvu-r.1	123406148	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123409642	heterogeneous nuclear ribonucleoprotein A0-like
sbi-r.1	8084829	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100833186	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100828715	heterogeneous nuclear ribonucleoprotein A0

Top 50 coexpressed genes to 100813165 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100813165 (gma-u.5 coexpression data)

CoexMap"100813165"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03040 [list] [network] Spliceosome (466 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(3741 genes)

IEA

GO CC

GO:0000785 [list] [network] chromatin	(372 genes)	IEA
GO:0005654 [list] [network] nucleoplasm	(377 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(2019 genes)

IEA

Protein

XP_003547716.1 [sequence] [blastp]
XP_014624578.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, mito 1, plas 1, extr 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1	(predict for XP_003547716.1)
cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for XP_014624578.1)

Subcellular
localization
TargetP

other 9	(predict for XP_003547716.1)
other 8	(predict for XP_014624578.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100813165	gma-r.7 for 100813165	gma-u.5 for 113001701	gma-u.5 for 100814490	gma-u.5 for 100801373	mtr-u.5 for 11427003	mtr-u.5 for 25495139	ppo-u.5 for 7485125	ppo-u.5 for 7496843	ath-u.5 for AT3G13224	ath-u.5 for AT5G40490	bra-r.6 for 103849754	bra-r.6 for 103863998	vvi-u.5 for 100265210	vvi-u.5 for 100246013	vvi-u.5 for 100240900	ghi-r.1 for 107954751	ghi-r.1 for 107954030	ghi-r.1 for 107950061	bna-r.1 for 106377523	bna-r.1 for 106446166	bna-r.1 for 106391017	cit-r.1 for 102618321	sly-u.5 for 101263479	sly-u.5 for 101265253	sot-r.1 for 102579349	sot-r.1 for 102605795	sot-r.1 for 102605451	nta-r.1 for 107765935	nta-r.1 for 107794577	nta-r.1 for 107799939	osa-u.5 for 4345910	osa-u.5 for 4345254	zma-u.5 for 103645111	zma-u.5 for 103639292	zma-u.5 for 100217268	tae-r.2 for 123165488	tae-r.2 for 123138129	tae-r.2 for 123128276	hvu-r.1 for 123406148	hvu-r.1 for 123409642	sbi-r.1 for 8084829	bdi-r.1 for 100833186	bdi-r.1 for 100828715

Ortholog

Ortholog ID: 2811

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

glycine-rich RNA-binding protein 3, mitochondrial

heterogeneous nuclear ribonucleoprotein A3 homolog 2

RNA recognition motif-containing protein

heterogeneous nuclear ribonucleoprotein A1