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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107954751   heterogeneous nuclear ribonucleoprotein 1 
 ath-u.5   AT3G13224   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G40490   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   113001701   glycine-rich RNA-binding protein 3, mitochondrial 
 gma-u.5   100814490   heterogeneous nuclear ribonucleoprotein A3 
 gma-u.5   100813165   glycine-rich RNA-binding protein 3, mitochondrial 
 vvi-u.5   100265210   heterogeneous nuclear ribonucleoprotein 27C-like 
 vvi-u.5   100246013   heterogeneous nuclear ribonucleoprotein 1 
 vvi-u.5   100240900   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7485125   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7496843   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   11427003   heterogeneous nuclear ribonucleoprotein A1 
 mtr-u.5   25495139   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101265253   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101263479   heterogeneous nuclear ribonucleoprotein 1 
 osa-u.5   4345254   heterogeneous nuclear ribonucleoprotein 1 
 osa-u.5   4345910   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   100217268   uncharacterized LOC100217268 
 zma-u.5   103645111   glycine-rich RNA-binding protein 3, mitochondrial 
 zma-u.5   103639292   heterogeneous nuclear ribonucleoprotein 1-like 

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Top 50 coexpressed genes to 107954751 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107954751 (ghi-r.1 coexpression data)

CoexMap"107954751"


ghiLOC107954751 | Entrez gene ID : 107954751    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 2 3 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0010468 [list] [network] regulation of gene expression  (5166 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (545 genes)  IEA  
GO:0000785 [list] [network] chromatin  (561 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016745896.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1  (predict for XP_016745896.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016745896.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107954751

.
ath-u.5
for
AT3G13224

.
ath-u.5
for
AT5G40490

.
gma-u.5
for
113001701

.
gma-u.5
for
100814490

.
gma-u.5
for
100813165

.
vvi-u.5
for
100265210

.
vvi-u.5
for
100246013

.
vvi-u.5
for
100240900

.
ppo-u.5
for
7485125

.
ppo-u.5
for
7496843

.
mtr-u.5
for
11427003

.
mtr-u.5
for
25495139

.
sly-u.5
for
101265253

.
sly-u.5
for
101263479

.
osa-u.5
for
4345254

.
osa-u.5
for
4345910

.
zma-u.5
for
100217268

.
zma-u.5
for
103645111

.
zma-u.5
for
103639292

.


Ortholog ID: 2811
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit bdi bdi nta nta
Symbol AT3G13224 AT5G40490 LOC100801373 LOC100813165 LOC101265253 LOC101263479 LOC4345910 LOC4345254 LOC100217268 LOC103645111 LOC103849754 LOC103863998 LOC100240900 LOC100265210 LOC7496843 LOC7485125 LOC25495139 LOC11427003 LOC123156008 LOC123165488 LOC123406148 LOC123409642 LOC107892251 LOC107916320 LOC106377523 LOC106446166 LOC8084829 LOC102606088 LOC102605451 LOC102618321 LOC100828715 LOC100833186 LOC107830030 LOC107824717
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein A3 homolog 2 glycine-rich RNA-binding protein 3, mitochondrial heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC100217268 glycine-rich RNA-binding protein 3, mitochondrial heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein A3 homolog 2 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 27C-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein A1 heterogeneous nuclear ribonucleoprotein 27C heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein A0-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein A1-like 2 heterogeneous nuclear ribonucleoprotein 1 cold-inducible RNA-binding protein-like heterogeneous nuclear ribonucleoprotein A1-like uncharacterized LOC102618321 heterogeneous nuclear ribonucleoprotein A0 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 5
osa03015 mRNA surveillance pathway 3
osa03060 Protein export 2
osa03040 Spliceosome 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 2
zma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03050 Proteasome 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 12
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 9
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03015 mRNA surveillance pathway 3
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03040 Spliceosome 3
bdi00010 Glycolysis / Gluconeogenesis 2
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 5
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 3
bdi04142 Lysosome 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820515 834047 100801373 100813165 101265253 101263479 4345910 4345254 100217268 103645111 103849754 103863998 100240900 100265210 7496843 7485125 25495139 11427003 123156008 123165488 123406148 123409642 107892251 107916320 106377523 106446166 8084829 102606088 102605451 102618321 100828715 100833186 107830030 107824717
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