ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123406148	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123409642	heterogeneous nuclear ribonucleoprotein A0-like
tae-r.2	123145388	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123138129	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123156008	heterogeneous nuclear ribonucleoprotein 27C
bdi-r.1	100833186	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100828715	heterogeneous nuclear ribonucleoprotein A0
osa-u.5	4345254	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4345910	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100217268	uncharacterized LOC100217268
zma-u.5	103645111	glycine-rich RNA-binding protein 3, mitochondrial
zma-u.5	103639292	heterogeneous nuclear ribonucleoprotein 1-like
sbi-r.1	8084829	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	AT3G13224	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G40490	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	113001701	glycine-rich RNA-binding protein 3, mitochondrial
gma-u.5	100814490	heterogeneous nuclear ribonucleoprotein A3
gma-u.5	100813165	glycine-rich RNA-binding protein 3, mitochondrial
sly-u.5	101265253	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101263479	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103849754	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103863998	heterogeneous nuclear ribonucleoprotein A3 homolog 2
vvi-u.5	100265210	heterogeneous nuclear ribonucleoprotein 27C-like
vvi-u.5	100246013	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100240900	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7485125	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7496843	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11427003	heterogeneous nuclear ribonucleoprotein A1
mtr-u.5	25495139	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954751	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954030	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107950061	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	111202413	heterogeneous nuclear ribonucleoprotein 1-like
bna-r.1	106446166	heterogeneous nuclear ribonucleoprotein A1-like 2
bna-r.1	106391017	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102605451	heterogeneous nuclear ribonucleoprotein A1-like
sot-r.1	102605795	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102579349	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102618321	uncharacterized LOC102618321
nta-r.1	107765935	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107794577	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107799939	heterogeneous nuclear ribonucleoprotein 1-like

Top 50 coexpressed genes to 123406148 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123406148 (hvu-r.1 coexpression data)

CoexMap"123406148"

[Cytoscape]

Annotation

functional annotation

KEGG

hvg03040 [list] [network] Spliceosome (365 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(2040 genes)

IEA

GO CC

GO:0005654 [list] [network] nucleoplasm

(253 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1359 genes)

IEA

Protein

XP_044955560.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_044955560.1)

Subcellular
localization
TargetP

other 7

(predict for XP_044955560.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123406148	hvu-r.1 for 123409642	tae-r.2 for 123145388	tae-r.2 for 123138129	tae-r.2 for 123156008	bdi-r.1 for 100833186	bdi-r.1 for 100828715	osa-u.5 for 4345254	osa-u.5 for 4345910	zma-u.5 for 100217268	zma-u.5 for 103645111	zma-u.5 for 103639292	sbi-r.1 for 8084829	ath-u.5 for AT3G13224	ath-u.5 for AT5G40490	gma-u.5 for 113001701	gma-u.5 for 100814490	gma-u.5 for 100813165	sly-u.5 for 101265253	sly-u.5 for 101263479	bra-r.6 for 103849754	bra-r.6 for 103863998	vvi-u.5 for 100265210	vvi-u.5 for 100246013	vvi-u.5 for 100240900	ppo-u.5 for 7485125	ppo-u.5 for 7496843	mtr-u.5 for 11427003	mtr-u.5 for 25495139	ghi-r.1 for 107954751	ghi-r.1 for 107954030	ghi-r.1 for 107950061	bna-r.1 for 111202413	bna-r.1 for 106446166	bna-r.1 for 106391017	sot-r.1 for 102605451	sot-r.1 for 102605795	sot-r.1 for 102579349	cit-r.1 for 102618321	nta-r.1 for 107765935	nta-r.1 for 107794577	nta-r.1 for 107799939

Ortholog

Ortholog ID: 2811

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

heterogeneous nuclear ribonucleoprotein 1-like

heterogeneous nuclear ribonucleoprotein A0-like