ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100813520	agamous-like MADS-box protein MADS2
gma-r.7	100813520	agamous-like MADS-box protein MADS2
gma-u.5	100788427	agamous-like MADS-box protein MADS2
gma-u.5	100794429	agamous-like MADS-box protein MADS4
gma-u.5	100785322	agamous-like MADS-box protein MADS2
ath-u.5	SEP1	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP3	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP2	K-box region and MADS-box transcription factor family protein
bra-r.6	103829078	agamous-like MADS-box protein AGL9 homolog
bra-r.6	103835412	agamous-like MADS-box protein AGL9 homolog
bra-r.6	103839053	agamous-like MADS-box protein AGL9 homolog
vvi-u.5	100251943	agamous-like MADS-box protein MADS2
vvi-u.5	100232936	agamous-like MADS-box protein MADS2
vvi-u.5	MADS4	MADS-box protein 4
ghi-r.1	107909691	agamous-like MADS-box protein MADS2
ghi-r.1	107909849	agamous-like MADS-box protein AGL9 homolog
ghi-r.1	107899219	agamous-like MADS-box protein MADS2
bna-r.1	106433239	developmental protein SEPALLATA 1
bna-r.1	125580827	developmental protein SEPALLATA 2-like
bna-r.1	111198100	developmental protein SEPALLATA 3
cit-r.1	102618932	agamous-like MADS-box protein AGL9 homolog
cit-r.1	102611482	agamous-like MADS-box protein MADS2
cit-r.1	102620094	agamous-like MADS-box protein MADS2
nta-r.1	107797730	agamous-like MADS-box protein MADS2
nta-r.1	107816782	MADS-box protein 04g005320-like
osa-u.5	4346134	MADS-box transcription factor 7-like
osa-u.5	4347517	MADS-box transcription factor 8-like
zma-u.5	100415938	uncharacterized LOC100415938
zma-u.5	542043	MADS6
zma-u.5	542506	MADS27
tae-r.2	123104312	MADS-box transcription factor 8
tae-r.2	780637	MADS-box transcription factor 7
tae-r.2	542969	MADS-box transcription factor 8
sbi-r.1	8058971	MADS-box transcription factor 8
sbi-r.1	8060611	MADS-box transcription factor 7
bdi-r.1	100844294	MADS-box transcription factor 7-like
bdi-r.1	100843405	MADS-box transcription factor 8

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(899 genes)	IEA

Protein

XP_003516451.1 [sequence] [blastp]
XP_040871111.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_003516451.1)
nucl 10	(predict for XP_040871111.1)

Subcellular
localization
TargetP

other 8, mito 3	(predict for XP_003516451.1)
other 8, mito 3	(predict for XP_040871111.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100813520	gma-r.7 for 100813520	gma-u.5 for 100788427	gma-u.5 for 100794429	gma-u.5 for 100785322	ath-u.5 for SEP1	ath-u.5 for SEP3	ath-u.5 for SEP2	bra-r.6 for 103829078	bra-r.6 for 103835412	bra-r.6 for 103839053	vvi-u.5 for 100251943	vvi-u.5 for 100232936	vvi-u.5 for MADS4	ghi-r.1 for 107909691	ghi-r.1 for 107909849	ghi-r.1 for 107899219	bna-r.1 for 106433239	bna-r.1 for 125580827	bna-r.1 for 111198100	cit-r.1 for 102618932	cit-r.1 for 102611482	cit-r.1 for 102620094	nta-r.1 for 107797730	nta-r.1 for 107816782	osa-u.5 for 4346134	osa-u.5 for 4347517	zma-u.5 for 100415938	zma-u.5 for 542043	zma-u.5 for 542506	tae-r.2 for 123104312	tae-r.2 for 780637	tae-r.2 for 542969	sbi-r.1 for 8058971	sbi-r.1 for 8060611	bdi-r.1 for 100844294	bdi-r.1 for 100843405

Ortholog

Ortholog ID: 747

Species

gma

ath

bra

vvi

ghi

bna

cit

sly

nta

osa

zma

tae

sbi

bdi

Symbol

LOC100794429

MADS28

LOC100811049

SEP1

SEP3

SEP2

MADS4

MADS2

TM29

Function^*

agamous-like MADS-box protein MADS4

MADS transcription factor

agamous-like MADS-box protein MADS2

K-box region and MADS-box transcription factor family protein