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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100815386   pre-mRNA-processing protein 40C 
 gma-r.7   100815386   pre-mRNA-processing protein 40C 
 gma-u.5   100816454   pre-mRNA-processing protein 40C 
 gma-u.5   100806139   pre-mRNA-processing protein 40C 
 mtr-u.5   11443624   pre-mRNA-processing protein 40C 
 ppo-u.5   7498165   pre-mRNA-processing protein 40C 
 ppo-u.5   7481593   pre-mRNA-processing protein 40C 
 ath-u.5   PRP40C   pre-mRNA-processing protein 40C 
 vvi-u.5   100254722   pre-mRNA-processing protein 40C 
 sly-u.5   101250296   pre-mRNA-processing protein 40C 
 osa-u.5   4348939   pre-mRNA-processing protein 40C 
 zma-u.5   100304231   Pre-mRNA-processing protein 40C 

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Top 50 coexpressed genes to 100815386 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100815386 (gma-u.5 coexpression data)

CoexMap"100815386"


gmaLOC100815386 | Entrez gene ID : 100815386    
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03040 [list] [network] Spliceosome (466 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (44 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (217 genes)  IEA  
Protein XP_006590812.2 [sequence] [blastp]
XP_006590813.2 [sequence] [blastp]
XP_014619435.1 [sequence] [blastp]
XP_014619436.1 [sequence] [blastp]
XP_040862606.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_006590812.2)
nucl 9  (predict for XP_006590813.2)
nucl 9  (predict for XP_014619435.1)
nucl 9  (predict for XP_014619436.1)
nucl 9  (predict for XP_040862606.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_006590812.2)
chlo 6,  other 4  (predict for XP_006590813.2)
other 5,  chlo 4  (predict for XP_014619435.1)
chlo 6,  other 4  (predict for XP_014619436.1)
other 5,  chlo 4  (predict for XP_040862606.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100815386
gma-r.7
for
100815386
gma-u.5
for
100816454
gma-u.5
for
100806139
mtr-u.5
for
11443624
ppo-u.5
for
7498165
ppo-u.5
for
7481593
ath-u.5
for
PRP40C
vvi-u.5
for
100254722
sly-u.5
for
101250296
osa-u.5
for
4348939
zma-u.5
for
100304231


Ortholog ID: 8473
Species gma gma mtr ppo ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC100815386 LOC100816454 LOC11443624 LOC7498165 LOC7481593 PRP40C LOC103869415 LOC100254722 LOC107922278 LOC107918211 LOC106425155 LOC106415981 LOC102613774 LOC101250296 LOC102602660 LOC107801978 LOC107826384 LOC4348939 LOC100304231 LOC123181118 LOC123121808 LOC123431639 LOC8067131 LOC100837275 CHLRE_09g393551v5
Function* pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C-like pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C Pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 15
tae03013 Nucleocytoplasmic transport 5
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100815386 100816454 11443624 7498165 7481593 821521 103869415 100254722 107922278 107918211 106425155 106415981 102613774 101250296 102602660 107801978 107826384 4348939 100304231 123181118 123121808 123431639 8067131 100837275 5720117
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