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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100822908   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 tae-r.2   123102547   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 tae-r.2   123119732   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 tae-r.2   123110734   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 hvu-r.1   123399971   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 osa-u.5   4352523   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 zma-u.5   103639469   pentatricopeptide repeat-containing protein, chloroplastic-like 
 sbi-r.1   8068842   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ath-u.5   GUN1   s uncoupled 1 
 gma-u.5   100794695   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 gma-u.5   100778991   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 sly-u.5   101265032   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 bra-r.6   103867877   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 bra-r.6   103865140   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 vvi-u.5   100255579   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 ppo-u.5   7481408   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 ppo-u.5   7495210   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 mtr-u.5   11420621   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 mtr-u.5   11421148   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   121224135   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   107946005   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   107924444   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 bna-r.1   125608271   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 
 bna-r.1   106379787   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 
 bna-r.1   106380478   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 sot-r.1   102602193   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 cit-r.1   102611354   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 nta-r.1   107764668   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 nta-r.1   107801966   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 

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Top 50 coexpressed genes to 100822908 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100822908 (bdi-r.1 coexpression data)

CoexMap"100822908"


bdiLOC100822908 | Entrez gene ID : 100822908      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 2 1 2 2 3 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003579293.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_003579293.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_003579293.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100822908
tae-r.2
for
123102547
tae-r.2
for
123119732
tae-r.2
for
123110734
hvu-r.1
for
123399971
osa-u.5
for
4352523
zma-u.5
for
103639469
sbi-r.1
for
8068842
ath-u.5
for
GUN1
gma-u.5
for
100794695
gma-u.5
for
100778991
sly-u.5
for
101265032
bra-r.6
for
103867877
bra-r.6
for
103865140
vvi-u.5
for
100255579
ppo-u.5
for
7481408
ppo-u.5
for
7495210
mtr-u.5
for
11420621
mtr-u.5
for
11421148
ghi-r.1
for
121224135
ghi-r.1
for
107946005
ghi-r.1
for
107924444
bna-r.1
for
125608271
bna-r.1
for
106379787
bna-r.1
for
106380478
sot-r.1
for
102602193
cit-r.1
for
102611354
nta-r.1
for
107764668
nta-r.1
for
107801966


Ortholog ID: 6820
Species bdi tae tae tae hvu osa zma sbi ath gma gma sly bra bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot cit nta nta
Symbol LOC100822908 LOC123102547 LOC123119732 LOC123110734 LOC123399971 LOC4352523 LOC103639469 LOC8068842 GUN1 LOC100794695 LOC100778991 LOC101265032 LOC103867877 LOC103865140 LOC100255579 LOC7481408 LOC7495210 LOC11420621 LOC11421148 LOC121224135 LOC107946005 LOC107912309 LOC125608271 LOC106379787 LOC106380478 LOC102602193 LOC102611354 LOC107764668 LOC107801966
Function* pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein, chloroplastic-like pentatricopeptide repeat-containing protein At2g31400, chloroplastic s uncoupled 1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic-like pentatricopeptide repeat-containing protein GUN1, chloroplastic-like pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 5
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00460 Cyanoamino acid metabolism 3
bna00500 Starch and sucrose metabolism 3
bna00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 2
sot00020 Citrate cycle (TCA cycle) 2
sot00620 Pyruvate metabolism 2
sot00785 Lipoic acid metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta04146 Peroxisome 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100822908 123102547 123119732 123110734 123399971 4352523 103639469 8068842 817698 100794695 100778991 101265032 103867877 103865140 100255579 7481408 7495210 11420621 11421148 121224135 107946005 107912309 125608271 106379787 106380478 102602193 102611354 107764668 107801966
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