ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100829838	phytochrome B
tae-r.2	123097663	phytochrome B
tae-r.2	123092340	phytochrome B
tae-r.2	100137004	phytochrome B
hvu-r.1	123448812	phytochrome B
osa-u.5	4332623	phytochrome B-like
zma-u.5	100381811	phytochromeB2
zma-u.5	100383702	Phytochrome B
sbi-r.1	8081072	phytochrome B
ath-u.5	PHYB	phytochrome B
ath-u.5	PHYD	phytochrome D
ath-u.5	PHYE	phytochrome E
gma-u.5	PHYE1	phytochrome E-like
gma-u.5	PHYE2	phytochrome E-like
gma-u.5	PHYB	phytochrome B-like
sly-u.5	PHYB1	phytochrome B1
sly-u.5	PHYB2	phytochrome B2
sly-u.5	PHYE	phytochrome E
bra-r.6	103869720	phytochrome B
vvi-u.5	PHYE	phytochrome E
vvi-u.5	100261882	phytochrome B
ppo-u.5	7485902	phytochrome B
ppo-u.5	7485825	phytochrome B
mtr-u.5	11420025	phytochrome B-2
ghi-r.1	107935905	phytochrome E
ghi-r.1	107896595	phytochrome B
ghi-r.1	107916208	phytochrome B
bna-r.1	125606336	phytochrome B
bna-r.1	106400775	phytochrome B-like
bna-r.1	106391876	phytochrome E
sot-r.1	102577925	phytochrome B
sot-r.1	102580316	phytochrome B-like
sot-r.1	102588382	phytochrome E
cit-r.1	102618185	phytochrome B
cit-r.1	102608760	phytochrome E
nta-r.1	107825586	phytochrome E-like
nta-r.1	107809873	phytochrome E-like
nta-r.1	107780828	phytochrome B

Top 50 coexpressed genes to 100829838 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100829838 (bdi-r.1 coexpression data)

CoexMap"100829838"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi04712 [list] [network] Circadian rhythm - plant (44 genes)

GO BP

GO:0009584 [list] [network] detection of visible light	(3 genes)	IEA
GO:0009585 [list] [network] red, far-red light phototransduction	(3 genes)	IEA
GO:0017006 [list] [network] protein-tetrapyrrole linkage	(5 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1579 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2880 genes)

IEA

GO MF

GO:0009881 [list] [network] photoreceptor activity	(6 genes)	IEA
GO:0042803 [list] [network] protein homodimerization activity	(9 genes)	IEA
GO:0000155 [list] [network] phosphorelay sensor kinase activity	(14 genes)	IEA

Protein

XP_003558068.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, chlo_mito 4, mito 1, nucl 1

(predict for XP_003558068.1)

Subcellular
localization
TargetP

mito 7

(predict for XP_003558068.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100829838	tae-r.2 for 123097663	tae-r.2 for 123092340	tae-r.2 for 100137004	hvu-r.1 for 123448812	osa-u.5 for 4332623	zma-u.5 for 100381811	zma-u.5 for 100383702	sbi-r.1 for 8081072	ath-u.5 for PHYB	ath-u.5 for PHYD	ath-u.5 for PHYE	gma-u.5 for PHYE1	gma-u.5 for PHYE2	gma-u.5 for PHYB	sly-u.5 for PHYB1	sly-u.5 for PHYB2	sly-u.5 for PHYE	bra-r.6 for 103869720	vvi-u.5 for PHYE	vvi-u.5 for 100261882	ppo-u.5 for 7485902	ppo-u.5 for 7485825	mtr-u.5 for 11420025	ghi-r.1 for 107935905	ghi-r.1 for 107896595	ghi-r.1 for 107916208	bna-r.1 for 125606336	bna-r.1 for 106400775	bna-r.1 for 106391876	sot-r.1 for 102577925	sot-r.1 for 102580316	sot-r.1 for 102588382	cit-r.1 for 102618185	cit-r.1 for 102608760	nta-r.1 for 107825586	nta-r.1 for 107809873	nta-r.1 for 107780828

Ortholog

Ortholog ID: 3650

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

PHYB

PHYD

PHYE

PHYE1

PHYE2

PHYB

PHYB1

PHYB2

PHYE

PHYE

Function^*

phytochrome B

phytochrome B-like

phytochromeB2

Phytochrome B

phytochrome B

phytochrome D

phytochrome E

phytochrome E-like

phytochrome B-like

phytochrome B1

phytochrome B2

phytochrome E

phytochrome B

phytochrome E

phytochrome B

phytochrome B-2

phytochrome E

phytochrome B

phytochrome E

phytochrome B-like

phytochrome E

phytochrome B

phytochrome B-like

phytochrome E

phytochrome B

phytochrome E

phytochrome E-like

phytochrome B

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae03082	ATP-dependent chromatin remodeling	3
tae04712	Circadian rhythm - plant	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae03082	ATP-dependent chromatin remodeling	3
tae04712	Circadian rhythm - plant	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma00010	Glycolysis / Gluconeogenesis	2
zma00030	Pentose phosphate pathway	2
zma00051	Fructose and mannose metabolism	2
zma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00020	Citrate cycle (TCA cycle)	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma00760	Nicotinate and nicotinamide metabolism	2
gma01240	Biosynthesis of cofactors	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00860	Porphyrin metabolism	3
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly00906	Carotenoid biosynthesis	2
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	3
vvi00460	Cyanoamino acid metabolism	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi00562	Inositol phosphate metabolism	2
vvi04070	Phosphatidylinositol signaling system	2
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	2
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	2
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00905	Brassinosteroid biosynthesis	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	5
nta04517	IgSF CAM signaling	2
nta04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	5

Expression

Expression pattern

Entrez Gene ID^*

100829838

123097663

123092340

100137004

123448812

4332623

100381811

100383702

8081072

816394

827319

827538

100808192

100800339

100799831

101262847

101264523

101253446

103869720

100264019

100261882

7485902

7485825

11420025

107935905

107896595

121202968

106400775

106391876

106360866

102577925

102580316

102588382

102618185

102608760

107809873

107767359

107782401

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	1	2	1	3	3	3	1	2	2	1	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100829838 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100829838 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**