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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107916208   phytochrome B 
 ghi-r.1   107935905   phytochrome E 
 ghi-r.1   107896595   phytochrome B 
 ghi-r.1   121202968   phytochrome E 
 ath-u.5   PHYB   phytochrome B 
 ath-u.5   PHYD   phytochrome D 
 ath-u.5   PHYE   phytochrome E 
 bra-r.6   103869720   phytochrome B 
 bna-r.1   106400775   phytochrome B-like 
 bna-r.1   106391876   phytochrome E 
 bna-r.1   106370906   phytochrome B-like 
 cit-r.1   102618185   phytochrome B 
 cit-r.1   102608760   phytochrome E 
 gma-u.5   PHYE1   phytochrome E-like 
 gma-u.5   PHYE2   phytochrome E-like 
 gma-u.5   PHYB   phytochrome B-like 
 vvi-u.5   PHYE   phytochrome E 
 vvi-u.5   100261882   phytochrome B 
 ppo-u.5   7485902   phytochrome B 
 ppo-u.5   7485825   phytochrome B 
 mtr-u.5   11420025   phytochrome B-2 
 sly-u.5   PHYE   phytochrome E 
 sly-u.5   PHYB2   phytochrome B2 
 sly-u.5   PHYB1   phytochrome B1 
 sot-r.1   102580316   phytochrome B-like 
 sot-r.1   102577925   phytochrome B 
 sot-r.1   102588382   phytochrome E 
 nta-r.1   107825586   phytochrome E-like 
 nta-r.1   107809873   phytochrome E-like 
 nta-r.1   107782401   phytochrome B 
 osa-u.5   4332623   phytochrome B-like 
 zma-u.5   100383702   Phytochrome B 
 zma-u.5   100381811   phytochromeB2 
 tae-r.2   100137004   phytochrome B 
 tae-r.2   123097663   phytochrome B 
 tae-r.2   123092340   phytochrome B 
 hvu-r.1   123448812   phytochrome B 
 sbi-r.1   8081072   phytochrome B 
 bdi-r.1   100829838   phytochrome B 

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Top 50 coexpressed genes to 107916208 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107916208 (ghi-r.1 coexpression data)

CoexMap"107916208"


ghiLOC107916208 | Entrez gene ID : 107916208    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 3 2 3 2 2 1 3 3 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04712 [list] [network] Circadian rhythm - plant (130 genes)
GO BP
GO:0009584 [list] [network] detection of visible light  (10 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (16 genes)  IEA  
GO:0009585 [list] [network] red, far-red light phototransduction  (26 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0009881 [list] [network] photoreceptor activity  (18 genes)  IEA  
GO:0042803 [list] [network] protein homodimerization activity  (27 genes)  IEA  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (51 genes)  IEA  
Protein XP_016700852.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_016700852.1)
Subcellular
localization
TargetP
other 5  (predict for XP_016700852.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107916208
ghi-r.1
for
107935905
ghi-r.1
for
107896595
ghi-r.1
for
121202968
ath-u.5
for
PHYB
ath-u.5
for
PHYD
ath-u.5
for
PHYE
bra-r.6
for
103869720
bna-r.1
for
106400775
bna-r.1
for
106391876
bna-r.1
for
106370906
cit-r.1
for
102618185
cit-r.1
for
102608760
gma-u.5
for
PHYE1
gma-u.5
for
PHYE2
gma-u.5
for
PHYB
vvi-u.5
for
PHYE
vvi-u.5
for
100261882
ppo-u.5
for
7485902
ppo-u.5
for
7485825
mtr-u.5
for
11420025
sly-u.5
for
PHYE
sly-u.5
for
PHYB2
sly-u.5
for
PHYB1
sot-r.1
for
102580316
sot-r.1
for
102577925
sot-r.1
for
102588382
nta-r.1
for
107825586
nta-r.1
for
107809873
nta-r.1
for
107782401
osa-u.5
for
4332623
zma-u.5
for
100383702
zma-u.5
for
100381811
tae-r.2
for
100137004
tae-r.2
for
123097663
tae-r.2
for
123092340
hvu-r.1
for
123448812
sbi-r.1
for
8081072
bdi-r.1
for
100829838


Ortholog ID: 3650
Species ghi ghi ghi ath ath ath bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC107935905 LOC107896595 LOC121202968 PHYB PHYD PHYE LOC103869720 LOC106400775 LOC106391876 LOC106360866 LOC102618185 LOC102608760 PHYE1 PHYE2 PHYB PHYE LOC100261882 LOC7485902 LOC7485825 LOC11420025 PHYE PHYB2 PHYB1 LOC102580316 LOC102577925 LOC102588382 LOC107809873 LOC107782401 LOC107767359 LOC4332623 LOC100383702 LOC100381811 LOC100137004 LOC123097663 LOC123092340 LOC123448812 LOC8081072 LOC100829838
Function* phytochrome E phytochrome B phytochrome E phytochrome B phytochrome D phytochrome E phytochrome B phytochrome B-like phytochrome E phytochrome E phytochrome B phytochrome E phytochrome E-like phytochrome E-like phytochrome B-like phytochrome E phytochrome B phytochrome B phytochrome B phytochrome B-2 phytochrome E phytochrome B2 phytochrome B1 phytochrome B-like phytochrome B phytochrome E phytochrome E-like phytochrome B phytochrome B phytochrome B-like Phytochrome B phytochromeB2 phytochrome B phytochrome B phytochrome B phytochrome B phytochrome B phytochrome B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00020 Citrate cycle (TCA cycle) 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00760 Nicotinate and nicotinamide metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00460 Cyanoamino acid metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi00562 Inositol phosphate metabolism 2
vvi04070 Phosphatidylinositol signaling system 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly00906 Carotenoid biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00905 Brassinosteroid biosynthesis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 5
nta04517 IgSF CAM signaling 2
nta04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae03082 ATP-dependent chromatin remodeling 3
tae04712 Circadian rhythm - plant 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae03082 ATP-dependent chromatin remodeling 3
tae04712 Circadian rhythm - plant 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107935905 107896595 121202968 816394 827319 827538 103869720 106400775 106391876 106360866 102618185 102608760 100808192 100800339 100799831 100264019 100261882 7485902 7485825 11420025 101253446 101264523 101262847 102580316 102577925 102588382 107809873 107782401 107767359 4332623 100383702 100381811 100137004 123097663 123092340 123448812 8081072 100829838
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