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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100831293   pentatricopeptide repeat-containing protein At5g65560 
 bdi-r.1   100843678   pentatricopeptide repeat-containing protein At5g65560-like 
 bdi-r.1   100835791   pentatricopeptide repeat-containing protein At5g65560 
 tae-r.2   123040920   pentatricopeptide repeat-containing protein At5g65560 
 tae-r.2   123137105   pentatricopeptide repeat-containing protein At5g65560 
 hvu-r.1   123409173   pentatricopeptide repeat-containing protein At5g65560-like 
 hvu-r.1   123427134   pentatricopeptide repeat-containing protein At5g65560-like 
 osa-u.5   4329793   pentatricopeptide repeat-containing protein At5g65560 
 osa-u.5   4341903   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103653689   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103651695   pentatricopeptide repeat-containing protein At5g65560 
 sbi-r.1   8079833   pentatricopeptide repeat-containing protein At5g65560 
 sbi-r.1   8070569   pentatricopeptide repeat-containing protein At5g65560 
 sbi-r.1   8065112   pentatricopeptide repeat-containing protein At5g65560 
 ath-u.5   AT5G65560   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100797910   pentatricopeptide repeat-containing protein At5g65560 
 sly-u.5   101247676   pentatricopeptide repeat-containing protein At5g65560 
 bra-r.6   103873993   pentatricopeptide repeat-containing protein At5g65560 
 vvi-u.5   100255912   pentatricopeptide repeat-containing protein At5g65560 
 mtr-u.5   11408567   pentatricopeptide repeat-containing protein At5g65560 
 ghi-r.1   107945421   pentatricopeptide repeat-containing protein At5g65560 
 ghi-r.1   107924247   pentatricopeptide repeat-containing protein At5g65560 
 bna-r.1   106436822   pentatricopeptide repeat-containing protein At5g65560 
 bna-r.1   106348116   pentatricopeptide repeat-containing protein At5g65560 
 sot-r.1   102586323   pentatricopeptide repeat-containing protein At5g65560-like 
 sot-r.1   102593124   pentatricopeptide repeat-containing protein At5g65560-like 
 cit-r.1   102625517   pentatricopeptide repeat-containing protein At5g65560 
 nta-r.1   107831651   uncharacterized LOC107831651 
 nta-r.1   107786258   uncharacterized LOC107786258 
 nta-r.1   107788500   uncharacterized LOC107788500 

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Top 50 coexpressed genes to 100831293 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100831293 (bdi-r.1 coexpression data)

CoexMap"100831293"


bdiLOC100831293 | Entrez gene ID : 100831293      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi mtr ghi bna sot cit nta cre ppo
Paralog 3 2 2 2 2 3 1 1 1 1 1 1 2 2 2 1 3 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003578861.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo_mito 5,  chlo 4  (predict for XP_003578861.2)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for XP_003578861.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100831293
bdi-r.1
for
100843678
bdi-r.1
for
100835791
tae-r.2
for
123040920
tae-r.2
for
123137105
hvu-r.1
for
123409173
hvu-r.1
for
123427134
osa-u.5
for
4329793
osa-u.5
for
4341903
zma-u.5
for
103653689
zma-u.5
for
103651695
sbi-r.1
for
8079833
sbi-r.1
for
8070569
sbi-r.1
for
8065112
ath-u.5
for
AT5G65560
gma-u.5
for
100797910
sly-u.5
for
101247676
bra-r.6
for
103873993
vvi-u.5
for
100255912
mtr-u.5
for
11408567
ghi-r.1
for
107945421
ghi-r.1
for
107924247
bna-r.1
for
106436822
bna-r.1
for
106348116
sot-r.1
for
102586323
sot-r.1
for
102593124
cit-r.1
for
102625517
nta-r.1
for
107831651
nta-r.1
for
107786258
nta-r.1
for
107788500


Ortholog ID: 5004
Species bdi bdi bdi tae tae tae hvu hvu osa osa zma zma sbi sbi sbi ath gma sly bra vvi mtr ghi ghi bna bna sot sot cit nta nta nta
Symbol LOC100831293 LOC100843678 LOC100835791 LOC123137105 LOC123148833 LOC123159070 LOC123409173 LOC123427134 LOC4329793 LOC4341903 LOC103653689 LOC103651695 LOC8079833 LOC8070569 LOC8065112 AT5G65560 LOC100797910 LOC101247676 LOC103873993 LOC100255912 LOC11408567 LOC107945421 LOC107924247 LOC106436822 LOC106348116 LOC102586323 LOC102593124 LOC102625517 LOC107831651 LOC107786258 LOC107826068
Function* pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 uncharacterized LOC107831651 uncharacterized LOC107786258 uncharacterized LOC107826068
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
hvu00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03430 Mismatch repair 2
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100831293 100843678 100835791 123137105 123148833 123159070 123409173 123427134 4329793 4341903 103653689 103651695 8079833 8070569 8065112 836682 100797910 101247676 103873993 100255912 11408567 107945421 107924247 106436822 106348116 102586323 102593124 102625517 107831651 107786258 107826068
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