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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8079833   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103653689   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103651695   pentatricopeptide repeat-containing protein At5g65560 
 osa-u.5   4329793   pentatricopeptide repeat-containing protein At5g65560 
 osa-u.5   4341903   pentatricopeptide repeat-containing protein At5g65560 
 ath-u.5   AT5G65560   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100797910   pentatricopeptide repeat-containing protein At5g65560 
 sly-u.5   101247676   pentatricopeptide repeat-containing protein At5g65560 
 vvi-u.5   100255912   pentatricopeptide repeat-containing protein At5g65560 
 mtr-u.5   11408567   pentatricopeptide repeat-containing protein At5g65560 

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Top 50 coexpressed genes to 8079833 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8079833 (sbi-r.1 coexpression data)

CoexMap"8079833"


sbiLOC8079833 | Entrez gene ID : 8079833    
Species sbi zma osa ath gma sly vvi mtr bra nta cre hvu cit bdi ppo sot tae bna ghi
Paralog 1 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_021301753.1 [sequence] [blastp]
XP_021301754.1 [sequence] [blastp]
XP_021301755.1 [sequence] [blastp]
XP_021301756.1 [sequence] [blastp]
XP_021301757.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_021301753.1)
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_021301754.1)
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_021301755.1)
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_021301756.1)
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_021301757.1)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for XP_021301753.1)
mito 3,  other 3  (predict for XP_021301754.1)
mito 3,  other 3  (predict for XP_021301755.1)
mito 3,  other 3  (predict for XP_021301756.1)
mito 3,  other 3  (predict for XP_021301757.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8079833

.
zma-u.5
for
103653689

.
zma-u.5
for
103651695

.
osa-u.5
for
4329793

.
osa-u.5
for
4341903

.
ath-u.5
for
AT5G65560

.
gma-u.5
for
100797910

.
sly-u.5
for
101247676

.
vvi-u.5
for
100255912

.
mtr-u.5
for
11408567

.


Ortholog ID: 5004
Species ath gma sly osa osa zma zma bra vvi mtr tae tae hvu hvu ghi ghi bna sbi sbi sot sot cit bdi bdi nta nta
Symbol AT5G65560 LOC100797910 LOC101247676 LOC4329793 LOC4341903 LOC103653689 LOC103651695 LOC103873993 LOC100255912 LOC11408567 LOC123159070 LOC123148833 LOC123409173 LOC123427134 LOC107924247 LOC107945421 LOC106348116 LOC8065112 LOC8070569 LOC102593124 LOC102586323 LOC102625517 LOC100831293 LOC100843678 LOC107786258 LOC107831651
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like uncharacterized LOC107786258 uncharacterized LOC107831651
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03430 Mismatch repair 2
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
hvu00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836682 100797910 101247676 4329793 4341903 103653689 103651695 103873993 100255912 11408567 123159070 123148833 123409173 123427134 107924247 107945421 106348116 8065112 8070569 102593124 102586323 102625517 100831293 100843678 107786258 107831651
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