ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100835511	ruvB-like protein 1
tae-r.2	123068388	ruvB-like protein 1
tae-r.2	123087141	ruvB-like protein 1
tae-r.2	123095830	ruvB-like protein 1
hvu-r.1	123449672	ruvB-like protein 1
osa-u.5	4327368	ruvB-like protein 1
osa-u.5	4342553	ruvB-like protein 1
zma-u.5	100272912	uncharacterized LOC100272912
zma-u.5	100191624	RuvB-like protein 1
sbi-r.1	8057503	ruvB-like protein 1
sbi-r.1	8085442	ruvB-like protein 1
ath-u.5	RIN1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	102659805	ruvB-like protein 1
gma-u.5	100809596	ruvB-like protein 1
sly-u.5	101264735	ruvB-like protein 1
sly-u.5	101256745	ruvB-like protein 1
bra-r.6	103845554	ruvB-like protein 1
bra-r.6	103851434	ruvB-like protein 1
vvi-u.5	100262179	ruvB-like protein 1
ppo-u.5	18098083	ruvB-like protein 1
ppo-u.5	7478571	ruvB-like protein 1
mtr-u.5	11435218	ruvB-like protein 1
ghi-r.1	107889188	ruvB-like protein 1
ghi-r.1	107959211	ruvB-like protein 1
ghi-r.1	107902779	ruvB-like protein 1
bna-r.1	106438367	ruvB-like protein 1
bna-r.1	106419548	ruvB-like protein 1
bna-r.1	106371658	ruvB-like protein 1
sot-r.1	102579037	ruvB-like protein 1
sot-r.1	102584723	ruvB-like protein 1
cit-r.1	102608634	ruvB-like protein 1
nta-r.1	107824339	ruvB-like protein 1
nta-r.1	107795284	ruvB-like protein 1
cre-r.1	CHLRE_09g414050v5	uncharacterized protein

Top 50 coexpressed genes to 100835511 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100835511 (bdi-r.1 coexpression data)

CoexMap"100835511"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03082 [list] [network] ATP-dependent chromatin remodeling (59 genes)

GO BP

GO:0000492 [list] [network] box C/D snoRNP assembly	(5 genes)	IEA
GO:0006338 [list] [network] chromatin remodeling	(123 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(365 genes)	IEA

GO CC

GO:0097255 [list] [network] R2TP complex	(2 genes)	IEA
GO:0000812 [list] [network] Swr1 complex	(7 genes)	IEA
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex	(8 genes)	IEA
GO:0031011 [list] [network] Ino80 complex	(13 genes)	IEA

GO MF

GO:0003678 [list] [network] DNA helicase activity	(58 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(417 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1995 genes)	IEA

Protein

XP_010232536.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9

(predict for XP_010232536.1)

Subcellular
localization
TargetP

other 8

(predict for XP_010232536.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100835511	tae-r.2 for 123068388	tae-r.2 for 123087141	tae-r.2 for 123095830	hvu-r.1 for 123449672	osa-u.5 for 4327368	osa-u.5 for 4342553	zma-u.5 for 100272912	zma-u.5 for 100191624	sbi-r.1 for 8057503	sbi-r.1 for 8085442	ath-u.5 for RIN1	gma-u.5 for 102659805	gma-u.5 for 100809596	sly-u.5 for 101264735	sly-u.5 for 101256745	bra-r.6 for 103845554	bra-r.6 for 103851434	vvi-u.5 for 100262179	ppo-u.5 for 18098083	ppo-u.5 for 7478571	mtr-u.5 for 11435218	ghi-r.1 for 107889188	ghi-r.1 for 107959211	ghi-r.1 for 107902779	bna-r.1 for 106438367	bna-r.1 for 106419548	bna-r.1 for 106371658	sot-r.1 for 102579037	sot-r.1 for 102584723	cit-r.1 for 102608634	nta-r.1 for 107824339	nta-r.1 for 107795284	cre-r.1 for CHLRE_09g414050v5

Ortholog

Ortholog ID: 4619

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RIN1

Function^*

ruvB-like protein 1

uncharacterized LOC100272912

RuvB-like protein 1

ruvB-like protein 1

P-loop containing nucleoside triphosphate hydrolases superfamily protein

ruvB-like protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	3
osa03030	DNA replication	2
osa03410	Base excision repair	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03082	ATP-dependent chromatin remodeling	2
zma03008	Ribosome biogenesis in eukaryotes	2
zma03013	Nucleocytoplasmic transport	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03082	ATP-dependent chromatin remodeling	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03010	Ribosome	2
gma03018	RNA degradation	2
gma03013	Nucleocytoplasmic transport	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	3
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03010	Ribosome	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3
ghi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3
ghi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot00230	Purine metabolism	2
sot03082	ATP-dependent chromatin remodeling	2
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	3
nta03082	ATP-dependent chromatin remodeling	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

100835511

123087141

123095830

123076932

123449672

4327368

4342553

100272912

100191624

8057503

8085442

832293

102659805

100809596

101264735

101256745

103845554

103851434

100262179

18098083

7478571

11435218

107889188

107902779

107891536

106419548

106371658

106384702

102579037

102584723

102608634

107824339

107795284

5722339

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	2	2	2	1	2	2	2	1	2	1	3	3	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100835511 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100835511 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**