ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100836209	phytochrome A type 3
bdi-r.1	100834357	phytochrome C
tae-r.2	123105051	phytochrome C
tae-r.2	100873142	phytochrome A type 3
tae-r.2	100873141	phytochrome A type 3
hvu-r.1	123447547	phytochrome A type 3
hvu-r.1	123452263	phytochrome C
osa-u.5	4333930	phytochrome A-like
osa-u.5	4334135	phytochrome C-like
zma-u.5	103644014	phytochrome C
zma-u.5	100192976	phytochromeC2
zma-u.5	115101004	uncharacterized LOC115101004
sbi-r.1	8059991	phytochrome a
sbi-r.1	8086232	phytochrome C
ath-u.5	PHYC	phytochrome C
ath-u.5	PHYA	phytochrome A
gma-u.5	E4	phytochrome A
gma-u.5	PHYA	phytochrome A
gma-u.5	PHYA3	phytochrome A-2-like
sly-u.5	PHYF	phytochrome F
sly-u.5	phyA	Phytochrome A
bra-r.6	103868296	phytochrome C
bra-r.6	103871728	phytochrome A
bra-r.6	103843346	phytochrome A
vvi-u.5	PHYA	phytochrome A
vvi-u.5	100258014	phytochrome C
ppo-u.5	7482219	phytochrome A
mtr-u.5	11405950	phytochrome A
ghi-r.1	121209328	phytochrome A
ghi-r.1	107939622	phytochrome A
ghi-r.1	107923974	phytochrome C-like
bna-r.1	106417700	phytochrome A
bna-r.1	111212637	phytochrome C
bna-r.1	106346267	phytochrome A
sot-r.1	102595581	phytochrome C
sot-r.1	C-PHYA	type A phytochrome
cit-r.1	102616503	phytochrome A-2
cit-r.1	102618478	phytochrome C
nta-r.1	107773723	phytochrome C
nta-r.1	107807432	phytochrome C
nta-r.1	107812152	phytochrome A1

Top 50 coexpressed genes to 100836209 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100836209 (bdi-r.1 coexpression data)

CoexMap"100836209"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi04712 [list] [network] Circadian rhythm - plant (44 genes)

GO BP

GO:0009584 [list] [network] detection of visible light	(3 genes)	IEA
GO:0009585 [list] [network] red, far-red light phototransduction	(3 genes)	IEA
GO:0017006 [list] [network] protein-tetrapyrrole linkage	(5 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1579 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2880 genes)

IEA

GO MF

GO:0009881 [list] [network] photoreceptor activity	(6 genes)	IEA
GO:0042803 [list] [network] protein homodimerization activity	(9 genes)	IEA
GO:0000155 [list] [network] phosphorelay sensor kinase activity	(14 genes)	IEA

Protein

XP_003560548.1 [sequence] [blastp]
XP_010230771.1 [sequence] [blastp]
XP_014752298.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, mito 1, vacu 1, golg 1	(predict for XP_003560548.1)
chlo 4, nucl 4, mito 1, vacu 1, golg 1	(predict for XP_010230771.1)
chlo 4, nucl 4, mito 1, vacu 1, golg 1	(predict for XP_014752298.1)

Subcellular
localization
TargetP

mito 7, chlo 4	(predict for XP_003560548.1)
mito 7, chlo 4	(predict for XP_010230771.1)
mito 7, chlo 4	(predict for XP_014752298.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100836209	bdi-r.1 for 100834357	tae-r.2 for 123105051	tae-r.2 for 100873142	tae-r.2 for 100873141	hvu-r.1 for 123447547	hvu-r.1 for 123452263	osa-u.5 for 4333930	osa-u.5 for 4334135	zma-u.5 for 103644014	zma-u.5 for 100192976	zma-u.5 for 115101004	sbi-r.1 for 8059991	sbi-r.1 for 8086232	ath-u.5 for PHYC	ath-u.5 for PHYA	gma-u.5 for E4	gma-u.5 for PHYA	gma-u.5 for PHYA3	sly-u.5 for PHYF	sly-u.5 for phyA	bra-r.6 for 103868296	bra-r.6 for 103871728	bra-r.6 for 103843346	vvi-u.5 for PHYA	vvi-u.5 for 100258014	ppo-u.5 for 7482219	mtr-u.5 for 11405950	ghi-r.1 for 121209328	ghi-r.1 for 107939622	ghi-r.1 for 107923974	bna-r.1 for 106417700	bna-r.1 for 111212637	bna-r.1 for 106346267	sot-r.1 for 102595581	sot-r.1 for C-PHYA	cit-r.1 for 102616503	cit-r.1 for 102618478	nta-r.1 for 107773723	nta-r.1 for 107807432	nta-r.1 for 107812152

Ortholog

Ortholog ID: 3383

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

PHYC

PHYA

PHYA3

PHYF

phyA

PHYA

C-PHYA

Function^*

phytochrome A type 3

phytochrome C

phytochrome A type 3

phytochrome C

phytochrome A-like

phytochrome C-like

phytochrome C

uncharacterized LOC115101004

phytochrome A-like

phytochrome a

phytochrome C

phytochrome A

phytochrome A-2-like

phytochrome F

Phytochrome A

phytochrome C

phytochrome A

phytochrome C

phytochrome A

phytochrome C-like

phytochrome C

phytochrome A

phytochrome C

phytochrome A

phytochrome C

type A phytochrome

phytochrome A-2

phytochrome C

phytochrome A1

phytochrome A1-like

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi00785	Lipoic acid metabolism	2
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2
zma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00460	Cyanoamino acid metabolism	4
sbi00500	Starch and sucrose metabolism	4
sbi00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00750	Vitamin B6 metabolism	2
bna04712	Circadian rhythm - plant	2
bna04142	Lysosome	2
bna00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot04712	Circadian rhythm - plant	2
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100836209

100834357

123105051

123113346

123122860

123447547

123452263

4333930

4334135

103644014

115101004

103643916

8059991

8086232

833570

837483

100790763

547810

100791098

101259349

544176

103868296

103871728

103843346

100240824

100258014

7482219

11405950

107923974

107912456

107893266

106417700

111212637

106346267

102595581

102577627

102616503

102618478

107773723

107812152

107827766

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	3	2	2	3	2	3	2	1	1	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100836209 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100836209 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**