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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100840701   CCR4-NOT transcription complex subunit 1 
 bdi-r.1   100843991   CCR4-NOT transcription complex subunit 1 
 tae-r.2   123181624   CCR4-NOT transcription complex subunit 1 
 tae-r.2   123106092   CCR4-NOT transcription complex subunit 1 
 tae-r.2   123093957   CCR4-NOT transcription complex subunit 1 
 hvu-r.1   123438675   CCR4-NOT transcription complex subunit 1-like 
 hvu-r.1   123449980   CCR4-NOT transcription complex subunit 1-like 
 osa-u.5   4331296   uncharacterized LOC4331296 
 osa-u.5   9272729   uncharacterized LOC9272729 
 zma-u.5   100502409   uncharacterized LOC100502409 
 zma-u.5   100383837   uncharacterized LOC100383837 
 sbi-r.1   8058085   CCR4-NOT transcription complex subunit 1 
 sbi-r.1   8081555   CCR4-NOT transcription complex subunit 1 
 ath-u.5   AT1G02080   transcription regulator 
 gma-u.5   100803794   CCR4-NOT transcription complex subunit 1 
 gma-u.5   100783935   CCR4-NOT transcription complex subunit 1 
 sly-u.5   101267935   uncharacterized LOC101267935 
 bra-r.6   103844691   CCR4-NOT transcription complex subunit 1 
 bra-r.6   103850259   CCR4-NOT transcription complex subunit 1 
 bra-r.6   103843826   CCR4-NOT transcription complex subunit 1 
 vvi-u.5   100256945   uncharacterized LOC100256945 
 vvi-u.5   100261590   uncharacterized LOC100261590 
 ppo-u.5   18105172   uncharacterized LOC18105172 
 ppo-u.5   7483819   uncharacterized LOC7483819 
 mtr-u.5   11429926   CCR4-NOT transcription complex subunit 1 
 ghi-r.1   107945544   CCR4-NOT transcription complex subunit 1 
 ghi-r.1   107911887   CCR4-NOT transcription complex subunit 1 
 ghi-r.1   107924016   CCR4-NOT transcription complex subunit 1 
 bna-r.1   106452420   CCR4-NOT transcription complex subunit 1 
 bna-r.1   111207780   CCR4-NOT transcription complex subunit 1-like 
 bna-r.1   111203605   CCR4-NOT transcription complex subunit 1 
 sot-r.1   102583960   CCR4-NOT transcription complex subunit 1 
 cit-r.1   102630812   uncharacterized LOC102630812 
 nta-r.1   107802598   uncharacterized LOC107802598 
 nta-r.1   107804987   uncharacterized LOC107804987 
 cre-r.1   CHLRE_14g632950v5   uncharacterized protein 

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Top 50 coexpressed genes to 100840701 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100840701 (bdi-r.1 coexpression data)

CoexMap"100840701"


bdiLOC100840701 | Entrez gene ID : 100840701      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 2 2 2 1 2 1 3 2 2 1 3 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03018 [list] [network] RNA degradation (115 genes)
GO BP
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (19 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (20 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0060090 [list] [network] molecular adaptor activity  (184 genes)  IEA  
Protein XP_010229360.2 [sequence] [blastp]
XP_014752687.1 [sequence] [blastp]
XP_014752689.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cyto_plas 3  (predict for XP_010229360.2)
cyto 5,  nucl 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_014752687.1)
cyto 5,  nucl 3,  cyto_plas 3  (predict for XP_014752689.1)
Subcellular
localization
TargetP
other 6  (predict for XP_010229360.2)
other 6  (predict for XP_014752687.1)
other 6  (predict for XP_014752689.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100840701
bdi-r.1
for
100843991
tae-r.2
for
123181624
tae-r.2
for
123106092
tae-r.2
for
123093957
hvu-r.1
for
123438675
hvu-r.1
for
123449980
osa-u.5
for
4331296
osa-u.5
for
9272729
zma-u.5
for
100502409
zma-u.5
for
100383837
sbi-r.1
for
8058085
sbi-r.1
for
8081555
ath-u.5
for
AT1G02080
gma-u.5
for
100803794
gma-u.5
for
100783935
sly-u.5
for
101267935
bra-r.6
for
103844691
bra-r.6
for
103850259
bra-r.6
for
103843826
vvi-u.5
for
100256945
vvi-u.5
for
100261590
ppo-u.5
for
18105172
ppo-u.5
for
7483819
mtr-u.5
for
11429926
ghi-r.1
for
107945544
ghi-r.1
for
107911887
ghi-r.1
for
107924016
bna-r.1
for
106452420
bna-r.1
for
111207780
bna-r.1
for
111203605
sot-r.1
for
102583960
cit-r.1
for
102630812
nta-r.1
for
107802598
nta-r.1
for
107804987
cre-r.1
for
CHLRE_14g632950v5


Ortholog ID: 4643
Species bdi bdi tae tae tae hvu hvu osa osa zma zma sbi sbi ath gma gma sly bra bra bra vvi vvi ppo ppo mtr ghi ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100840701 LOC100843991 LOC123181624 LOC123106092 LOC123127893 LOC123438675 LOC123449980 LOC4331296 LOC9272729 LOC100502409 LOC100383837 LOC8058085 LOC8081555 AT1G02080 LOC100803794 LOC100783935 LOC101267935 LOC103844691 LOC103850259 LOC103843826 LOC100256945 LOC100261590 LOC18105172 LOC7483819 LOC11429926 LOC107945544 LOC107911887 LOC107924016 LOC111207780 LOC111203605 LOC106370831 LOC102583960 LOC102630812 LOC107802598 LOC107804987 CHLRE_14g632950v5
Function* CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1-like uncharacterized LOC4331296 uncharacterized LOC9272729 uncharacterized LOC100502409 uncharacterized LOC100383837 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 transcription regulator CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC101267935 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC100256945 uncharacterized LOC100261590 uncharacterized LOC18105172 uncharacterized LOC7483819 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1 uncharacterized LOC102630812 uncharacterized LOC107802598 uncharacterized LOC107804987 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
bdi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae04148 Efferocytosis 4
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 3
gma03015 mRNA surveillance pathway 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04120 Ubiquitin mediated proteolysis 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 6
mtr03420 Nucleotide excision repair 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03018 RNA degradation 3
ghi04136 Autophagy - other 2
ghi04518 Integrin signaling 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03430 Mismatch repair 2
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100840701 100843991 123181624 123106092 123127893 123438675 123449980 4331296 9272729 100502409 100383837 8058085 8081555 839244 100803794 100783935 101267935 103844691 103850259 103843826 100256945 100261590 18105172 7483819 11429926 107945544 107911887 107924016 111207780 111203605 106370831 102583960 102630812 107802598 107804987 5718333
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