ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100845208	RNA-binding protein 42
osa-u.5	4330022	uncharacterized LOC4330022
osa-u.5	4346363	uncharacterized LOC4346363
zma-u.5	100272487	uncharacterized LOC100272487
zma-u.5	100193774	RNA-binding (RRM/RBD/RNP motifs) family protein
zma-u.5	100217290	uncharacterized LOC100217290
ath-u.5	AT3G04500	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100807693	RNA-binding protein 42
gma-u.5	100800281	RNA-binding protein 42
gma-u.5	100791946	RNA-binding protein 42
sly-u.5	101250408	uncharacterized LOC101250408
sly-u.5	101246619	uncharacterized LOC101246619
sly-u.5	101246335	uncharacterized LOC101246335
vvi-u.5	100246648	uncharacterized LOC100246648
vvi-u.5	100241581	uncharacterized LOC100241581
ppo-u.5	7474624	uncharacterized LOC7474624
ppo-u.5	7487184	uncharacterized LOC7487184
mtr-u.5	11416641	RNA-binding protein 42

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(271 genes)

IEA

Protein

XP_003573237.1 [sequence] [blastp]
XP_024317358.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_003573237.1)
nucl 9, chlo 1	(predict for XP_024317358.1)

Subcellular
localization
TargetP

chlo 5, other 4	(predict for XP_003573237.1)
chlo 5, other 4	(predict for XP_024317358.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100845208	osa-u.5 for 4330022	osa-u.5 for 4346363	zma-u.5 for 100272487	zma-u.5 for 100193774	zma-u.5 for 100217290	ath-u.5 for AT3G04500	gma-u.5 for 100807693	gma-u.5 for 100800281	gma-u.5 for 100791946	sly-u.5 for 101250408	sly-u.5 for 101246619	sly-u.5 for 101246335	vvi-u.5 for 100246648	vvi-u.5 for 100241581	ppo-u.5 for 7474624	ppo-u.5 for 7487184	mtr-u.5 for 11416641

Ortholog

Ortholog ID: 3446

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

RNA-binding protein 42

RNA-binding protein 42-like

uncharacterized LOC4330022

uncharacterized LOC4346363

uncharacterized LOC100272487

uncharacterized LOC100217290

RNA-binding protein 42

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 42

uncharacterized LOC101250408

uncharacterized LOC101246335

RNA-binding protein 42

uncharacterized LOC100246648

uncharacterized LOC100241581

uncharacterized LOC7474624

uncharacterized LOC7487184

RNA-binding protein 42

RNA-binding protein 42-like

uncharacterized LOC102609602

uncharacterized LOC107816239

uncharacterized LOC107813043

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2
hvu03040	Spliceosome	2
hvu03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa04141	Protein processing in endoplasmic reticulum	4
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3
osa03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03083	Polycomb repressive complex	2
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	5
sbi03040	Spliceosome	3
sbi03018	RNA degradation	2
sbi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	5
vvi04626	Plant-pathogen interaction	4
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi03013	Nucleocytoplasmic transport	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5

Expression

Expression pattern

Entrez Gene ID^*

100845208

100836790

123159184

123144857

123408719

123402198

4330022

4346363

100272487

100217290

8072492

110432877

819606

100807693

100800281

101250408

101246335

103848913

100246648

100241581

7474624

7487184

11416641

107936792

107892842

106443881

106450344

102586882

102585113

102609602

107816239

107813043

5727443

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100845208 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100845208 (bdi-r.1 coexpression data)


Species	bdi	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	1	3	3	2	2	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100845208 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100845208 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**