ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102589312	RNA-binding protein 42
sot-r.1	102586882	RNA-binding protein 42-like
sot-r.1	102585113	RNA-binding protein 42-like
sot-r.1	102585441	RNA-binding protein 42-like
sly-u.5	101250408	uncharacterized LOC101250408
sly-u.5	101246619	uncharacterized LOC101246619
sly-u.5	101246335	uncharacterized LOC101246335
nta-r.1	107769551	uncharacterized LOC107769551
nta-r.1	107774441	uncharacterized LOC107774441
nta-r.1	107776982	uncharacterized LOC107776982
ath-u.5	AT3G04500	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100807693	RNA-binding protein 42
gma-u.5	100800281	RNA-binding protein 42
gma-u.5	100791946	RNA-binding protein 42
bra-r.6	103848913	RNA-binding protein 42
vvi-u.5	100246648	uncharacterized LOC100246648
vvi-u.5	100241581	uncharacterized LOC100241581
ppo-u.5	7487184	uncharacterized LOC7487184
ppo-u.5	7474624	uncharacterized LOC7474624
mtr-u.5	11416641	RNA-binding protein 42
ghi-r.1	107936792	RNA-binding protein 42
ghi-r.1	107926742	RNA-binding protein 42
ghi-r.1	107893190	RNA-binding protein 42
bna-r.1	106450344	RNA-binding protein 42-like
bna-r.1	125587670	RNA-binding protein 42-like
bna-r.1	106345968	RNA-binding protein 42
cit-r.1	102609602	uncharacterized LOC102609602
osa-u.5	4330022	uncharacterized LOC4330022
osa-u.5	4346363	uncharacterized LOC4346363
zma-u.5	100272487	uncharacterized LOC100272487
zma-u.5	100193774	RNA-binding (RRM/RBD/RNP motifs) family protein
zma-u.5	100217290	uncharacterized LOC100217290
tae-r.2	123127735	RNA-binding protein 42
tae-r.2	123154167	RNA-binding protein 42
tae-r.2	123159184	RNA-binding protein 42
hvu-r.1	123408719	RNA-binding protein 42
hvu-r.1	123402198	RNA-binding protein 42-like
sbi-r.1	8072492	RNA-binding protein 42
sbi-r.1	110432877	RNA-binding protein 42
bdi-r.1	100845208	RNA-binding protein 42
bdi-r.1	100836790	RNA-binding protein 42
cre-r.1	CHLRE_02g088800v5	uncharacterized protein

Top 50 coexpressed genes to 102589312 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102589312 (sot-r.1 coexpression data)

CoexMap"102589312"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(296 genes)

IEA

Protein

XP_006345891.1 [sequence] [blastp]
XP_006345892.1 [sequence] [blastp]
XP_006345893.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10	(predict for XP_006345891.1)
chlo 10	(predict for XP_006345892.1)
chlo 10	(predict for XP_006345893.1)

Subcellular
localization
TargetP

other 4, mito 3	(predict for XP_006345891.1)
other 4, mito 3	(predict for XP_006345892.1)
other 4, mito 3	(predict for XP_006345893.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102589312	sot-r.1 for 102586882	sot-r.1 for 102585113	sot-r.1 for 102585441	sly-u.5 for 101250408	sly-u.5 for 101246619	sly-u.5 for 101246335	nta-r.1 for 107769551	nta-r.1 for 107774441	nta-r.1 for 107776982	ath-u.5 for AT3G04500	gma-u.5 for 100807693	gma-u.5 for 100800281	gma-u.5 for 100791946	bra-r.6 for 103848913	vvi-u.5 for 100246648	vvi-u.5 for 100241581	ppo-u.5 for 7487184	ppo-u.5 for 7474624	mtr-u.5 for 11416641	ghi-r.1 for 107936792	ghi-r.1 for 107926742	ghi-r.1 for 107893190	bna-r.1 for 106450344	bna-r.1 for 125587670	bna-r.1 for 106345968	cit-r.1 for 102609602	osa-u.5 for 4330022	osa-u.5 for 4346363	zma-u.5 for 100272487	zma-u.5 for 100193774	zma-u.5 for 100217290	tae-r.2 for 123127735	tae-r.2 for 123154167	tae-r.2 for 123159184	hvu-r.1 for 123408719	hvu-r.1 for 123402198	sbi-r.1 for 8072492	sbi-r.1 for 110432877	bdi-r.1 for 100845208	bdi-r.1 for 100836790	cre-r.1 for CHLRE_02g088800v5

Ortholog

Ortholog ID: 3446

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein 42-like

uncharacterized LOC101250408

uncharacterized LOC101246619

uncharacterized LOC101246335

uncharacterized LOC107769551

uncharacterized LOC107813043

uncharacterized LOC107816239

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 42

uncharacterized LOC100246648

uncharacterized LOC100241581

uncharacterized LOC7487184

uncharacterized LOC7474624

RNA-binding protein 42

RNA-binding protein 42-like

uncharacterized LOC102609602

uncharacterized LOC4330022

uncharacterized LOC4346363

uncharacterized LOC100272487

RNA-binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100217290

RNA-binding protein 42

RNA-binding protein 42-like

RNA-binding protein 42

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	5
vvi04626	Plant-pathogen interaction	4
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00750	Vitamin B6 metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi03013	Nucleocytoplasmic transport	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa04141	Protein processing in endoplasmic reticulum	4
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3
osa03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03083	Polycomb repressive complex	2
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2
hvu03040	Spliceosome	2
hvu03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	5
sbi03040	Spliceosome	3
sbi03018	RNA degradation	2
sbi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5

Expression

Expression pattern

Entrez Gene ID^*

102586882

102585113

102585441

101250408

101246619

101246335

107769551

107813043

107816239

819606

100807693

100800281

100791946

103848913

100246648

100241581

7487184

7474624

11416641

107936792

107893190

107892842

106450344

125587670

106443881

102609602

4330022

4346363

100272487

100193774

100217290

123159184

123164331

123144857

123408719

123402198

8072492

110432877

100845208

100836790

5727443

The preparation time of this page was 0.2 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	1	3	1	2	2	1	3	3	1	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102589312 (sot-r.1 coexpression data)

Top 50 enrichment test to 102589312 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**