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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8072492   RNA-binding protein 42 
 zma-u.5   100272487   uncharacterized LOC100272487 
 zma-u.5   100217290   uncharacterized LOC100217290 
 zma-u.5   100193774   RNA-binding (RRM/RBD/RNP motifs) family protein 
 osa-u.5   4330022   uncharacterized LOC4330022 
 osa-u.5   4346363   uncharacterized LOC4346363 
 ath-u.5   AT3G04500   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100807693   RNA-binding protein 42 
 gma-u.5   100800281   RNA-binding protein 42 
 gma-u.5   100791946   RNA-binding protein 42 
 sly-u.5   101246335   uncharacterized LOC101246335 
 sly-u.5   101246619   uncharacterized LOC101246619 
 sly-u.5   101250408   uncharacterized LOC101250408 
 vvi-u.5   100246648   uncharacterized LOC100246648 
 vvi-u.5   100241581   uncharacterized LOC100241581 
 ppo-u.5   7487184   uncharacterized LOC7487184 
 ppo-u.5   7474624   uncharacterized LOC7474624 
 mtr-u.5   11416641   RNA-binding protein 42 

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Top 50 coexpressed genes to 8072492 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8072492 (sbi-r.1 coexpression data)

CoexMap"8072492"


sbiLOC8072492 | Entrez gene ID : 8072492      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 3 2 1 3 3 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_002454192.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_002454192.1)
Subcellular
localization
TargetP
scret 6  (predict for XP_002454192.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8072492

.
zma-u.5
for
100272487

.
zma-u.5
for
100217290

.
zma-u.5
for
100193774

.
osa-u.5
for
4330022

.
osa-u.5
for
4346363

.
ath-u.5
for
AT3G04500

.
gma-u.5
for
100807693

.
gma-u.5
for
100800281

.
gma-u.5
for
100791946

.
sly-u.5
for
101246335

.
sly-u.5
for
101246619

.
sly-u.5
for
101250408

.
vvi-u.5
for
100246648

.
vvi-u.5
for
100241581

.
ppo-u.5
for
7487184

.
ppo-u.5
for
7474624

.
mtr-u.5
for
11416641

.


Ortholog ID: 3446
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT3G04500 LOC100807693 LOC100800281 LOC101250408 LOC101246335 LOC4330022 LOC4346363 LOC100272487 LOC100217290 LOC103848913 LOC100246648 LOC100241581 LOC7474624 LOC7487184 LOC11416641 LOC123159184 LOC123144857 LOC123408719 LOC123402198 LOC107936792 LOC107892842 LOC106443881 LOC106450344 CHLRE_02g088800v5 LOC8072492 LOC110432877 LOC102586882 LOC102585113 LOC102609602 LOC100845208 LOC100836790 LOC107816239 LOC107813043
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding protein 42 RNA-binding protein 42 uncharacterized LOC101250408 uncharacterized LOC101246335 uncharacterized LOC4330022 uncharacterized LOC4346363 uncharacterized LOC100272487 uncharacterized LOC100217290 RNA-binding protein 42 uncharacterized LOC100246648 uncharacterized LOC100241581 uncharacterized LOC7474624 uncharacterized LOC7487184 RNA-binding protein 42 RNA-binding protein 42 RNA-binding protein 42 RNA-binding protein 42 RNA-binding protein 42-like RNA-binding protein 42 RNA-binding protein 42 RNA-binding protein 42-like RNA-binding protein 42-like uncharacterized protein RNA-binding protein 42 RNA-binding protein 42 RNA-binding protein 42-like RNA-binding protein 42-like uncharacterized LOC102609602 RNA-binding protein 42 RNA-binding protein 42 uncharacterized LOC107816239 uncharacterized LOC107813043
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa04141 Protein processing in endoplasmic reticulum 4
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03083 Polycomb repressive complex 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 5
vvi04626 Plant-pathogen interaction 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03040 Spliceosome 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 5
sbi03040 Spliceosome 3
sbi03018 RNA degradation 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819606 100807693 100800281 101250408 101246335 4330022 4346363 100272487 100217290 103848913 100246648 100241581 7474624 7487184 11416641 123159184 123144857 123408719 123402198 107936792 107892842 106443881 106450344 5727443 8072492 110432877 102586882 102585113 102609602 100845208 100836790 107816239 107813043
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