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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101245163   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 sly-r.6   101245163   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 sot-r.1   102579009   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 nta-r.1   107831039   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 nta-r.1   107773657   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 ath-u.5   PnsL2   PsbQ-like 2 
 gma-u.5   100807480   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 bra-r.6   103872111   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 bra-r.6   103842995   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 vvi-u.5   100243071   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 ppo-u.5   7492927   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 mtr-u.5   11413262   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 ghi-r.1   107893679   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 ghi-r.1   107918812   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 bna-r.1   106401704   photosynthetic NDH subunit of lumenal location 2, chloroplastic-like 
 bna-r.1   106380909   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 bna-r.1   106369134   photosynthetic NDH subunit of lumenal location 2, chloroplastic-like 
 cit-r.1   102608346   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 osa-u.5   4329766   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 zma-u.5   103653672   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 zma-u.5   103627333   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 tae-r.2   123134130   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 tae-r.2   123130629   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 tae-r.2   123095860   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 hvu-r.1   123402625   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 sbi-r.1   8070551   photosynthetic NDH subunit of lumenal location 2, chloroplastic 
 bdi-r.1   100839323   photosynthetic NDH subunit of lumenal location 2, chloroplastic 

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Top 50 coexpressed genes to 101245163 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101245163 (sly-u.5 coexpression data)

CoexMap"101245163"


slyLOC101245163 | Entrez gene ID : 101245163      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 2 1 1 1 2 3 1 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00195 [list] [network] Photosynthesis (83 genes)
GO BP
GO:0009767 [list] [network] photosynthetic electron transport chain  (18 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (101 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (17 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (27 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (28 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
GO:0005509 [list] [network] calcium ion binding  (241 genes)  IEA  
Protein XP_004238813.1 [sequence] [blastp]
XP_010320690.1 [sequence] [blastp]
XP_069153848.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  chlo 3,  mito 2,  cyto_pero 2  (predict for XP_004238813.1)
chlo 5,  pero 3,  mito 1,  cyto_pero 1  (predict for XP_010320690.1)
chlo 5,  pero 3,  mito 1,  cyto_pero 1  (predict for XP_069153848.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_004238813.1)
chlo 7,  other 3  (predict for XP_010320690.1)
chlo 7,  other 3  (predict for XP_069153848.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101245163
sly-r.6
for
101245163
sot-r.1
for
102579009
nta-r.1
for
107831039
nta-r.1
for
107773657
ath-u.5
for
PnsL2
gma-u.5
for
100807480
bra-r.6
for
103872111
bra-r.6
for
103842995
vvi-u.5
for
100243071
ppo-u.5
for
7492927
mtr-u.5
for
11413262
ghi-r.1
for
107893679
ghi-r.1
for
107918812
bna-r.1
for
106401704
bna-r.1
for
106380909
bna-r.1
for
106369134
cit-r.1
for
102608346
osa-u.5
for
4329766
zma-u.5
for
103653672
zma-u.5
for
103627333
tae-r.2
for
123134130
tae-r.2
for
123130629
tae-r.2
for
123095860
hvu-r.1
for
123402625
sbi-r.1
for
8070551
bdi-r.1
for
100839323


Ortholog ID: 8696
Species sly sot nta nta ath gma bra bra vvi ppo mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi
Symbol LOC101245163 LOC102579009 LOC107831039 LOC107773657 PnsL2 LOC100807480 LOC103872111 LOC103842995 LOC100243071 LOC7492927 LOC11413262 LOC107893679 LOC107918812 LOC106380909 LOC106369134 LOC125587478 LOC102608346 LOC4329766 LOC103653672 LOC103627333 LOC123130629 LOC123095860 LOC123141478 LOC123402625 LOC8070551 LOC100839323
Function* photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic PsbQ-like 2 photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic-like photosynthetic NDH subunit of lumenal location 2, chloroplastic-like photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic photosynthetic NDH subunit of lumenal location 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
sot01200 Carbon metabolism 3
sot00630 Glyoxylate and dicarboxylate metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta00670 One carbon pool by folate 4
nta00785 Lipoic acid metabolism 4
nta01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00195 Photosynthesis 4
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 4
bra00710 Carbon fixation by Calvin cycle 3
bra00910 Nitrogen metabolism 2
bra00195 Photosynthesis 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00910 Nitrogen metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra00260 Glycine, serine and threonine metabolism 2
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 3
mtr01200 Carbon metabolism 3
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
mtr00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
bna00670 One carbon pool by folate 3
bna00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
bna00670 One carbon pool by folate 3
bna00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00260 Glycine, serine and threonine metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00670 One carbon pool by folate 2
bna00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 3
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
zma00710 Carbon fixation by Calvin cycle 3
zma01200 Carbon metabolism 3
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma01200 Carbon metabolism 3
zma00196 Photosynthesis - antenna proteins 2
zma00710 Carbon fixation by Calvin cycle 2
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 9
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 12
tae00710 Carbon fixation by Calvin cycle 12
tae01200 Carbon metabolism 12
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 12
tae00710 Carbon fixation by Calvin cycle 12
tae01200 Carbon metabolism 12
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00195 Photosynthesis 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 4
bdi01200 Carbon metabolism 4
bdi00710 Carbon fixation by Calvin cycle 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101245163 102579009 107831039 107773657 837974 100807480 103872111 103842995 100243071 7492927 11413262 107893679 107918812 106380909 106369134 125587478 102608346 4329766 103653672 103627333 123130629 123095860 123141478 123402625 8070551 100839323
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