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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247350   ubiquitin carboxyl-terminal hydrolase 18 
 sly-r.6   101247350   ubiquitin carboxyl-terminal hydrolase 18 
 sly-u.5   101244268   ubiquitin carboxyl-terminal hydrolase 18 
 ath-u.5   UBP19   ubiquitin-specific protease 19 
 ath-u.5   UBP18   ubiquitin-specific protease 18 
 gma-u.5   100817913   ubiquitin carboxyl-terminal hydrolase 18 
 gma-u.5   100810577   ubiquitin carboxyl-terminal hydrolase 18 
 gma-u.5   100799652   ubiquitin carboxyl-terminal hydrolase 18 
 vvi-u.5   100246913   ubiquitin carboxyl-terminal hydrolase 18 
 ppo-u.5   7459906   ubiquitin carboxyl-terminal hydrolase 18 
 ppo-u.5   7458720   ubiquitin carboxyl-terminal hydrolase 18 
 mtr-u.5   25481970   ubiquitin carboxyl-terminal hydrolase 18 
 osa-u.5   4350688   ubiquitin carboxyl-terminal hydrolase 18 
 osa-u.5   4341708   ubiquitin carboxyl-terminal hydrolase 15 
 zma-u.5   103629692   ubiquitin carboxyl-terminal hydrolase 18 

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Top 50 coexpressed genes to 101247350 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247350 (sly-u.5 coexpression data)

CoexMap"101247350"


slyLOC101247350 | Entrez gene ID : 101247350      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 3 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016579 [list] [network] protein deubiquitination  (67 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (55 genes)  IEA  
Protein XP_004245303.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  E.R. 2,  E.R._plas 2,  vacu 1,  plas 1,  cyto 1,  mito 1  (predict for XP_004245303.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_004245303.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247350

.
sly-r.6
for
101247350

.
sly-u.5
for
101244268

.
ath-u.5
for
UBP19

.
ath-u.5
for
UBP18

.
gma-u.5
for
100817913

.
gma-u.5
for
100810577

.
gma-u.5
for
100799652

.
vvi-u.5
for
100246913

.
ppo-u.5
for
7459906

.
ppo-u.5
for
7458720

.
mtr-u.5
for
25481970

.
osa-u.5
for
4350688

.
osa-u.5
for
4341708

.
zma-u.5
for
103629692

.


Ortholog ID: 4870
Species ath ath gma gma sly sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol UBP19 UBP18 LOC100810577 LOC100820594 LOC101244268 LOC101247350 LOC4341708 LOC4350688 LOC103629692 LOC103851629 LOC103842238 LOC100246913 LOC7459906 LOC7458720 LOC25481970 LOC123149400 LOC123155834 LOC123407131 LOC107953715 LOC107939429 LOC106354736 LOC106446660 LOC8069359 LOC102605211 LOC102580922 LOC102607963 LOC100846465 LOC107790130 LOC107831642
Function* ubiquitin-specific protease 19 ubiquitin-specific protease 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 15 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 42 ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 42-like ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 18-like ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18-like ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 18 ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 18-like ubiquitin carboxyl-terminal hydrolase 18
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi01200 Carbon metabolism 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi01200 Carbon metabolism 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 8
sot03040 Spliceosome 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04148 Efferocytosis 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
nta00561 Glycerolipid metabolism 2
nta00566 Sulfoquinovose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817000 829295 100810577 100820594 101244268 101247350 4341708 4350688 103629692 103851629 103842238 100246913 7459906 7458720 25481970 123149400 123155834 123407131 107953715 107939429 106354736 106446660 8069359 102605211 102580922 102607963 100846465 107790130 107831642
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