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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   DCL2c   endoribonuclease Dicer 2c 
 sly-r.6   DCL2c   endoribonuclease Dicer 2c 
 sly-u.5   DCL4   dicer-like protein 4 
 sly-u.5   DCL2a   endoribonuclease Dicer 2a 
 sly-u.5   DCL2b   endoribonuclease Dicer 2b 
 ath-u.5   DCL2   dicer-like 2 
 ath-u.5   DCL3   dicer-like 3 
 ath-u.5   DCL4   dicer-like 4 
 gma-u.5   100816164   endoribonuclease Dicer homolog 2 
 gma-u.5   100814732   endoribonuclease Dicer homolog 3a 
 gma-u.5   100811631   endoribonuclease Dicer homolog 1 
 vvi-u.5   100254311   endoribonuclease Dicer homolog 3a 
 vvi-u.5   100264308   endoribonuclease Dicer homolog 1 
 vvi-u.5   100258190   endoribonuclease Dicer homolog 2 
 ppo-u.5   7479544   dicer-like protein 4 
 ppo-u.5   18096402   endoribonuclease Dicer homolog 1 
 ppo-u.5   7462112   endoribonuclease Dicer homolog 2 
 mtr-u.5   11436582   endoribonuclease Dicer homolog 3a 
 mtr-u.5   11431448   endoribonuclease Dicer homolog 1 
 mtr-u.5   25483869   endoribonuclease Dicer homolog 2 
 osa-u.5   107282071   endoribonuclease Dicer homolog 3a-like 
 osa-u.5   4346696   endoribonuclease Dicer homolog 2b-like 
 zma-u.5   100381417   uncharacterized LOC100381417 
 zma-u.5   100192986   dicer-like 105 
 zma-u.5   103626078   endoribonuclease Dicer homolog 2a 

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Top 50 coexpressed genes to DCL2c (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DCL2c (sly-u.5 coexpression data)

CoexMap"101247679"


slyDCL2c | Entrez gene ID : 101247679      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (20 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004525 [list] [network] ribonuclease III activity  (17 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001316342.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  plas 1  (predict for NP_001316342.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001316342.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
DCL2c

.
sly-r.6
for
DCL2c

.
sly-u.5
for
DCL4

.
sly-u.5
for
DCL2a

.
sly-u.5
for
DCL2b

.
ath-u.5
for
DCL2

.
ath-u.5
for
DCL3

.
ath-u.5
for
DCL4

.
gma-u.5
for
100816164

.
gma-u.5
for
100814732

.
gma-u.5
for
100811631

.
vvi-u.5
for
100254311

.
vvi-u.5
for
100264308

.
vvi-u.5
for
100258190

.
ppo-u.5
for
7479544

.
ppo-u.5
for
18096402

.
ppo-u.5
for
7462112

.
mtr-u.5
for
11436582

.
mtr-u.5
for
11431448

.
mtr-u.5
for
25483869

.
osa-u.5
for
107282071

.
osa-u.5
for
4346696

.
zma-u.5
for
100381417

.
zma-u.5
for
100192986

.
zma-u.5
for
103626078

.


Ortholog ID: 537
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol DCL2 DCL1 LOC100818702 LOC100796706 DCL2b DCL3 LOC4324864 LOC4348944 LOC103643440 LOC103626078 LOC103844613 LOC103855153 LOC100254311 LOC100264308 LOC18096402 LOC7463776 LOC11431448 LOC11436582 LOC123093773 LOC123080209 LOC123449883 LOC123431733 LOC107943956 LOC107961631 LOC106355731 LOC106439495 CHLRE_02g141000v5 CHLRE_07g345900v5 LOC8064552 LOC8064553 LOC102597432 LOC102601788 LOC102629634 LOC102617691 LOC100836134 LOC100824131 LOC107829523 LOC107824932
Function* dicer-like 2 dicer-like 1 dicer-like protein 4 endoribonuclease Dicer homolog 2 endoribonuclease Dicer 2b endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 3a-like endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3b-like endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 3 dicer-like protein 4 uncharacterized protein uncharacterized protein endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 1 dicer-like protein 4 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 3a-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03440 Homologous recombination 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa04141 Protein processing in endoplasmic reticulum 3
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo03082 ATP-dependent chromatin remodeling 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi04142 Lysosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 9
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
bdi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821300 839574 100818702 100796706 101256737 101265460 4324864 4348944 103643440 103626078 103844613 103855153 100254311 100264308 18096402 7463776 11431448 11436582 123093773 123080209 123449883 123431733 107943956 107961631 106355731 106439495 5720424 5718140 8064552 8064553 102597432 102601788 102629634 102617691 100836134 100824131 107829523 107824932
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