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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247817   tetratricopeptide repeat protein SKI3 
 sly-r.6   101247817   tetratricopeptide repeat protein SKI3 
 sot-r.1   102592859   tetratricopeptide repeat protein SKI3 
 nta-r.1   107814605   tetratricopeptide repeat protein SKI3 
 nta-r.1   107823717   tetratricopeptide repeat protein SKI3-like 
 ath-u.5   AT1G76630   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100779830   tetratricopeptide repeat protein SKI3 
 bra-r.6   103832123   tetratricopeptide repeat protein SKI3 
 vvi-u.5   100259801   tetratricopeptide repeat protein SKI3 
 ppo-u.5   7474535   tetratricopeptide repeat protein SKI3 
 mtr-u.5   25494462   tetratricopeptide repeat protein SKI3 
 ghi-r.1   107905746   tetratricopeptide repeat protein SKI3 
 ghi-r.1   107905709   tetratricopeptide repeat protein SKI3 
 bna-r.1   106427344   tetratricopeptide repeat protein SKI3 
 bna-r.1   106421669   tetratricopeptide repeat protein SKI3 
 cit-r.1   102614709   tetratricopeptide repeat protein SKI3 
 osa-u.5   4349298   tetratricopeptide repeat protein SKI3 
 zma-u.5   103644768   tetratricopeptide repeat protein SKI3 
 tae-r.2   123127559   tetratricopeptide repeat protein SKI3 
 tae-r.2   123181591   tetratricopeptide repeat protein SKI3 
 tae-r.2   123051585   tetratricopeptide repeat protein SKI3 
 hvu-r.1   123438108   tetratricopeptide repeat protein SKI3 
 sbi-r.1   8062834   tetratricopeptide repeat protein SKI3 
 bdi-r.1   100846927   tetratricopeptide repeat protein SKI3 
 cre-r.1   CHLRE_12g493550v5   uncharacterized protein 

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Top 50 coexpressed genes to 101247817 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247817 (sly-u.5 coexpression data)

CoexMap"101247817"


slyLOC101247817 | Entrez gene ID : 101247817    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 1 1 1 1 2 2 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO CC
GO:0055087 [list] [network] Ski complex  (3 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_010320493.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  nucl_plas 4,  cyto 3,  vacu 1,  pero 1  (predict for XP_010320493.2)
Subcellular
localization
TargetP
other 8  (predict for XP_010320493.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247817
sly-r.6
for
101247817
sot-r.1
for
102592859
nta-r.1
for
107814605
nta-r.1
for
107823717
ath-u.5
for
AT1G76630
gma-u.5
for
100779830
bra-r.6
for
103832123
vvi-u.5
for
100259801
ppo-u.5
for
7474535
mtr-u.5
for
25494462
ghi-r.1
for
107905746
ghi-r.1
for
107905709
bna-r.1
for
106427344
bna-r.1
for
106421669
cit-r.1
for
102614709
osa-u.5
for
4349298
zma-u.5
for
103644768
tae-r.2
for
123127559
tae-r.2
for
123181591
tae-r.2
for
123051585
hvu-r.1
for
123438108
sbi-r.1
for
8062834
bdi-r.1
for
100846927
cre-r.1
for
CHLRE_12g493550v5


Ortholog ID: 11138
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC101247817 LOC102592859 LOC107814605 LOC107823717 AT1G76630 LOC100779830 LOC103832123 LOC100259801 LOC7474535 LOC25494462 LOC107905746 LOC107905709 LOC106427344 LOC106421669 LOC102614709 LOC4349298 LOC103644768 LOC123127559 LOC123181591 LOC123051585 LOC123438108 LOC8062834 LOC100846927 CHLRE_12g493550v5
Function* tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3-like Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03018 RNA degradation 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03018 RNA degradation 3
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03013 Nucleocytoplasmic transport 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae00310 Lysine degradation 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03018 RNA degradation 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101247817 102592859 107814605 107823717 843996 100779830 103832123 100259801 7474535 25494462 107905746 107905709 106427344 106421669 102614709 4349298 103644768 123127559 123181591 123051585 123438108 8062834 100846927 5726086
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