ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101249027	protein SUPPRESSOR OF PHYA-105 1-like
sly-r.6	101249027	protein SUPPRESSOR OF PHYA-105 1-like
sly-u.5	101263834	protein SPA1-RELATED 2
sot-r.1	102597285	protein SPA1-RELATED 2
sot-r.1	102593062	protein SUPPRESSOR OF PHYA-105 1-like
nta-r.1	107824806	protein SUPPRESSOR OF PHYA-105 1-like
nta-r.1	107800631	protein SPA1-RELATED 2
nta-r.1	107773506	protein SPA1-RELATED 2
ath-u.5	SPA1	SPA (suppressor of phyA-105) protein family
ath-u.5	SPA2	SPA1-related 2
gma-u.5	100813452	protein SPA1-RELATED 2
gma-u.5	100802144	protein SUPPRESSOR OF PHYA-105 1
gma-u.5	100799267	protein SUPPRESSOR OF PHYA-105 1
bra-r.6	103858211	protein SUPPRESSOR OF PHYA-105 1
bra-r.6	103833904	protein SPA1-RELATED 2
bra-r.6	103866477	protein SUPPRESSOR OF PHYA-105 1
vvi-u.5	100257085	protein SPA1-RELATED 2
vvi-u.5	100256812	protein SUPPRESSOR OF PHYA-105 1
ppo-u.5	18097053	protein SPA1-RELATED 2
ppo-u.5	7492759	protein SUPPRESSOR OF PHYA-105 1
ppo-u.5	7479329	protein SPA1-RELATED 2
mtr-u.5	25500742	protein SUPPRESSOR OF PHYA-105 1
mtr-u.5	11437198	protein SPA1-RELATED 2
ghi-r.1	107947107	protein SPA1-RELATED 2
ghi-r.1	107924358	protein SUPPRESSOR OF PHYA-105 1
ghi-r.1	107909782	protein SUPPRESSOR OF PHYA-105 1
bna-r.1	106415001	protein SUPPRESSOR OF PHYA-105 1
bna-r.1	106422373	protein SPA1-RELATED 2
bna-r.1	106450516	protein SUPPRESSOR OF PHYA-105 1
cit-r.1	102621189	protein SPA1-RELATED 2
osa-u.5	4339663	protein SUPPRESSOR OF PHYA-105 1
zma-u.5	103635349	protein SUPPRESSOR OF PHYA-105 1
zma-u.5	100384276	Protein SUPPRESSOR OF PHYA-105 1
tae-r.2	123069052	protein SUPPRESSOR OF PHYA-105 1
tae-r.2	123147298	protein SUPPRESSOR OF PHYA-105 1
tae-r.2	123183200	protein SUPPRESSOR OF PHYA-105 1
hvu-r.1	123451067	protein SUPPRESSOR OF PHYA-105 1-like
sbi-r.1	8074618	protein SUPPRESSOR OF PHYA-105 1
bdi-r.1	100822627	protein SUPPRESSOR OF PHYA-105 1
cre-r.1	CHLRE_13g602700v5	uncharacterized protein

Top 50 coexpressed genes to 101249027 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101249027 (sly-u.5 coexpression data)

CoexMap"101249027"

[Cytoscape]

Annotation

functional annotation

KEGG

sly04712 [list] [network] Circadian rhythm - plant (47 genes)

GO BP

GO:0009640 [list] [network] photomorphogenesis	(13 genes)	IEA
GO:0006468 [list] [network] protein phosphorylation	(1059 genes)	IEA

GO CC

GO MF

GO:0004672 [list] [network] protein kinase activity	(1092 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1916 genes)	IEA
GO:0005515 [list] [network] protein binding	(3982 genes)	IEA

Protein

XP_004248447.1 [sequence] [blastp]
XP_019071596.1 [sequence] [blastp]
XP_019071597.1 [sequence] [blastp]
XP_069145814.1 [sequence] [blastp]
XP_069145815.1 [sequence] [blastp]
XP_069145816.1 [sequence] [blastp]
XP_069145817.1 [sequence] [blastp]
XP_069145818.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, extr 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_004248447.1)
nucl 6, cyto 1, extr 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_019071596.1)
nucl 6, cyto 1, extr 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_019071597.1)
nucl 6, cyto 1, extr 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_069145814.1)
nucl 6, cyto 1, extr 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_069145815.1)
nucl 4, golg 3, cyto 1, chlo 1, plas 1, E.R. 1, cyto_pero 1, E.R._plas 1	(predict for XP_069145816.1)
nucl 4, golg 3, cyto 1, chlo 1, plas 1, E.R. 1, cyto_pero 1, E.R._plas 1	(predict for XP_069145817.1)
nucl 4, golg 3, cyto 1, chlo 1, plas 1, E.R. 1, cyto_pero 1, E.R._plas 1	(predict for XP_069145818.1)

Subcellular
localization
TargetP

other 8	(predict for XP_004248447.1)
other 8	(predict for XP_019071596.1)
other 8	(predict for XP_019071597.1)
other 8	(predict for XP_069145814.1)
other 8	(predict for XP_069145815.1)
other 8	(predict for XP_069145816.1)
other 8	(predict for XP_069145817.1)
other 8	(predict for XP_069145818.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101249027	sly-r.6 for 101249027	sly-u.5 for 101263834	sot-r.1 for 102597285	sot-r.1 for 102593062	nta-r.1 for 107824806	nta-r.1 for 107800631	nta-r.1 for 107773506	ath-u.5 for SPA1	ath-u.5 for SPA2	gma-u.5 for 100813452	gma-u.5 for 100802144	gma-u.5 for 100799267	bra-r.6 for 103858211	bra-r.6 for 103833904	bra-r.6 for 103866477	vvi-u.5 for 100257085	vvi-u.5 for 100256812	ppo-u.5 for 18097053	ppo-u.5 for 7492759	ppo-u.5 for 7479329	mtr-u.5 for 25500742	mtr-u.5 for 11437198	ghi-r.1 for 107947107	ghi-r.1 for 107924358	ghi-r.1 for 107909782	bna-r.1 for 106415001	bna-r.1 for 106422373	bna-r.1 for 106450516	cit-r.1 for 102621189	osa-u.5 for 4339663	zma-u.5 for 103635349	zma-u.5 for 100384276	tae-r.2 for 123069052	tae-r.2 for 123147298	tae-r.2 for 123183200	hvu-r.1 for 123451067	sbi-r.1 for 8074618	bdi-r.1 for 100822627	cre-r.1 for CHLRE_13g602700v5

Ortholog

Ortholog ID: 3786

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPA1

SPA2

Function^*

protein SUPPRESSOR OF PHYA-105 1-like

protein SPA1-RELATED 2

protein SUPPRESSOR OF PHYA-105 1-like

protein SPA1-RELATED 2

SPA (suppressor of phyA-105) protein family

SPA1-related 2