ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101249220	PHD finger protein ALFIN-LIKE 2
sly-r.6	101249220	PHD finger protein ALFIN-LIKE 2
sly-m.5	101249220	PHD finger protein ALFIN-LIKE 2
sly-u.5	101259267	PHD finger protein ALFIN-LIKE 4
sly-u.5	101264911	PHD finger protein ALFIN-LIKE 4
sly-u.5	fin1	putative alfin-like transcription factor
ath-u.5	AL4	alfin-like 4
ath-u.5	AL7	alfin-like 7
ath-u.5	AL5	alfin-like 5
gma-u.5	100782478	PHD finger protein ALFIN-LIKE 2
gma-u.5	100777146	PHD finger superfamily protein
vvi-u.5	100247536	PHD finger protein ALFIN-LIKE 4
vvi-u.5	100259069	PHD finger protein ALFIN-LIKE 1
vvi-u.5	100852794	PHD finger protein ALFIN-LIKE 4
ppo-u.5	18109476	PHD finger protein Alfin1
ppo-u.5	7476667	PHD finger protein ALFIN-LIKE 4
ppo-u.5	7478178	PHD finger protein Alfin1
mtr-u.5	25500530	PHD finger protein ALFIN-LIKE 4
mtr-u.5	25498754	PHD finger protein ALFIN-LIKE 2
mtr-u.5	25494361	PHD finger protein Alfin1
osa-u.5	4324896	PHD finger protein ALFIN-LIKE 6-like
osa-u.5	4334579	PHD finger protein ALFIN-LIKE 3-like
osa-u.5	4335954	PHD finger protein ALFIN-LIKE 4-like
zma-u.5	100283897	uncharacterized LOC100283897
zma-u.5	103635648	PHD finger protein ALFIN-LIKE 5
zma-u.5	100382843	putative RING zinc finger and PHD zinc finger domain family protein

Top 50 coexpressed genes to 101249220 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101249220 (sly-u.5 coexpression data)

CoexMap"101249220"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1608 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(63 genes)	IEA
GO:0003712 [list] [network] transcription coregulator activity	(132 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(435 genes)	IEA

Protein

XP_004249075.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cyto 1, extr 1, pero 1, chlo_mito 1, cyto_pero 1

(predict for XP_004249075.1)

Subcellular
localization
TargetP

other 8

(predict for XP_004249075.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101249220	sly-r.6 for 101249220	sly-m.5 for 101249220	sly-u.5 for 101259267	sly-u.5 for 101264911	sly-u.5 for fin1	ath-u.5 for AL4	ath-u.5 for AL7	ath-u.5 for AL5	gma-u.5 for 100782478	gma-u.5 for 100777146	vvi-u.5 for 100247536	vvi-u.5 for 100259069	vvi-u.5 for 100852794	ppo-u.5 for 18109476	ppo-u.5 for 7476667	ppo-u.5 for 7478178	mtr-u.5 for 25500530	mtr-u.5 for 25498754	mtr-u.5 for 25494361	osa-u.5 for 4324896	osa-u.5 for 4334579	osa-u.5 for 4335954	zma-u.5 for 100283897	zma-u.5 for 103635648	zma-u.5 for 100382843

Ortholog

Ortholog ID: 163

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

AL3

AL2

Function^*

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 1

alfin-like 3

alfin-like 2

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 2

PHD finger protein Alfin1

PHD finger protein ALFIN-LIKE 4

PHD finger protein Alfin1

PHD finger protein ALFIN-LIKE 7

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 7

PHD finger protein ALFIN-LIKE 2-like

PHD finger protein ALFIN-LIKE 7-like

uncharacterized LOC100283422

ALFIN-like transcription factor

PHD finger protein ALFIN-LIKE 3

PHD finger protein ALFIN-LIKE 9

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath04141	Protein processing in endoplasmic reticulum	3
ath03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03040	Spliceosome	3
gma04382	Cornified envelope formation	2
gma03050	Proteasome	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	6
gma00020	Citrate cycle (TCA cycle)	3
gma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03020	RNA polymerase	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03015	mRNA surveillance pathway	2
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

101259267

101264911

102605058

102599199

107827993

107795748

823316

820290

100794662

100793126

103827517

100251933

100852794

7490325

18109476

25481987

25494361

107910658

107905795

106365444

106348570

102609956

102612029

4342784

9269003

100283422

100216893

123123460

123187982

123447832

123426080

8058123

110433568

100829192

100830499

5726584

5729202

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Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101249220 (sly-u.5 coexpression data)

Top 50 enrichment test to 101249220 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**