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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101255721   uncharacterized LOC101255721 
 sly-r.6   101255721   uncharacterized LOC101255721 
 ath-u.5   AT4G17610   tRNA/rRNA methyltransferase (SpoU) family protein 
 gma-u.5   100809637   uncharacterized LOC100809637 
 vvi-u.5   100855390   uncharacterized LOC100855390 
 ppo-u.5   18094554   uncharacterized LOC18094554 
 mtr-u.5   25493589   uncharacterized LOC25493589 
 osa-u.5   4331280   uncharacterized LOC4331280 
 zma-u.5   100278565   uncharacterized LOC100278565 

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Top 50 coexpressed genes to 101255721 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101255721 (sly-u.5 coexpression data)

CoexMap"101255721"


slyLOC101255721 | Entrez gene ID : 101255721      
Species sly ath gma vvi ppo mtr osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (24 genes)  IEA  
GO CC
GO MF
GO:0016423 [list] [network] tRNA (guanine) methyltransferase activity  (8 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_010325520.1 [sequence] [blastp]
XP_010325521.1 [sequence] [blastp]
XP_069144693.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  nucl 4,  cyto 1,  mito 1,  cysk 1  (predict for XP_010325520.1)
nucl 4,  E.R. 2,  cysk_nucl 2,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_010325521.1)
nucl 4,  E.R. 2,  cysk_nucl 2,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_069144693.1)
Subcellular
localization
TargetP
other 3  (predict for XP_010325520.1)
other 8  (predict for XP_010325521.1)
other 8  (predict for XP_069144693.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101255721

.
sly-r.6
for
101255721

.
ath-u.5
for
AT4G17610

.
gma-u.5
for
100809637

.
vvi-u.5
for
100855390

.
ppo-u.5
for
18094554

.
mtr-u.5
for
25493589

.
osa-u.5
for
4331280

.
zma-u.5
for
100278565

.


Ortholog ID: 9586
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G17610 LOC100809637 LOC101255721 LOC4331280 LOC100278565 LOC103855553 LOC100855390 LOC18094554 LOC25493589 LOC123099174 LOC123106138 LOC123450087 LOC107939899 LOC121203340 LOC106357027 LOC106428773 CHLRE_01g027350v5 LOC8059543 LOC102579800 LOC102625348 LOC100841607 LOC107767630 LOC107784157
Function* tRNA/rRNA methyltransferase (SpoU) family protein uncharacterized LOC100809637 uncharacterized LOC101255721 uncharacterized LOC4331280 uncharacterized LOC100278565 uncharacterized LOC103855553 uncharacterized LOC100855390 uncharacterized LOC18094554 uncharacterized LOC25493589 uncharacterized LOC123099174 uncharacterized LOC123106138 uncharacterized LOC123450087 uncharacterized LOC107939899 uncharacterized LOC121203340 uncharacterized LOC106357027 uncharacterized LOC106428773 uncharacterized protein uncharacterized LOC8059543 uncharacterized LOC102579800 uncharacterized LOC102625348 uncharacterized LOC100841607 uncharacterized LOC107767630 uncharacterized LOC107784157
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03008 Ribosome biogenesis in eukaryotes 3
gma03082 ATP-dependent chromatin remodeling 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03020 RNA polymerase 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03015 mRNA surveillance pathway 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03420 Nucleotide excision repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827480 100809637 101255721 4331280 100278565 103855553 100855390 18094554 25493589 123099174 123106138 123450087 107939899 121203340 106357027 106428773 5715308 8059543 102579800 102625348 100841607 107767630 107784157
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