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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101257661   alpha-amylase 3, chloroplastic 
 sly-r.6   101257661   alpha-amylase 3, chloroplastic 
 sot-r.1   102599630   alpha-amylase 3, chloroplastic 
 nta-r.1   107788587   alpha-amylase 3, chloroplastic 
 nta-r.1   107780165   alpha-amylase 3, chloroplastic 
 ath-u.5   AMY3   alpha-amylase-like 3 
 gma-u.5   100810333   alpha-amylase 3, chloroplastic 
 gma-u.5   100788193   alpha-amylase 3, chloroplastic 
 bra-r.6   103831524   alpha-amylase 3, chloroplastic 
 vvi-u.5   100267346   alpha-amylase 3, chloroplastic 
 ppo-u.5   18102525   alpha-amylase 3, chloroplastic 
 mtr-u.5   25502785   alpha-amylase 3, chloroplastic 
 ghi-r.1   107920127   alpha-amylase 3, chloroplastic 
 ghi-r.1   107946418   alpha-amylase 3, chloroplastic 
 ghi-r.1   107910680   alpha-amylase 3, chloroplastic 
 bna-r.1   106405641   alpha-amylase 3, chloroplastic 
 bna-r.1   106432554   alpha-amylase 3, chloroplastic 
 cit-r.1   102577968   alpha-amylase 3, chloroplastic 
 osa-u.5   4325575   alpha-amylase 3, chloroplastic 
 zma-u.5   103651265   alpha-amylase 3, chloroplastic 
 tae-r.2   123078800   alpha-amylase 3, chloroplastic 
 tae-r.2   123070353   alpha-amylase 3, chloroplastic 
 tae-r.2   123061722   alpha-amylase 3, chloroplastic 
 hvu-r.1   123444271   alpha-amylase 3, chloroplastic 
 sbi-r.1   8069792   alpha-amylase 3, chloroplastic 
 bdi-r.1   100821502   alpha-amylase 3, chloroplastic 

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Top 50 coexpressed genes to 101257661 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257661 (sly-u.5 coexpression data)

CoexMap"101257661"


slyLOC101257661 | Entrez gene ID : 101257661      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 1 1 1 1 3 2 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00500 [list] [network] Starch and sucrose metabolism (146 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (703 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (5 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (241 genes)  IEA  
Protein XP_004238770.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 2,  plas 2  (predict for XP_004238770.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_004238770.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101257661
sly-r.6
for
101257661
sot-r.1
for
102599630
nta-r.1
for
107788587
nta-r.1
for
107780165
ath-u.5
for
AMY3
gma-u.5
for
100810333
gma-u.5
for
100788193
bra-r.6
for
103831524
vvi-u.5
for
100267346
ppo-u.5
for
18102525
mtr-u.5
for
25502785
ghi-r.1
for
107920127
ghi-r.1
for
107946418
ghi-r.1
for
107910680
bna-r.1
for
106405641
bna-r.1
for
106432554
cit-r.1
for
102577968
osa-u.5
for
4325575
zma-u.5
for
103651265
tae-r.2
for
123078800
tae-r.2
for
123070353
tae-r.2
for
123061722
hvu-r.1
for
123444271
sbi-r.1
for
8069792
bdi-r.1
for
100821502


Ortholog ID: 9873
Species sly sot nta nta ath gma gma bra vvi ppo mtr ghi ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC101257661 LOC102599630 LOC107788587 LOC107780165 AMY3 LOC100810333 LOC100788193 LOC103831524 LOC100267346 LOC18102525 LOC25502785 LOC107946418 LOC107910680 LOC107887239 LOC106405641 LOC106432554 LOC102577968 LOC4325575 LOC103651265 LOC123078800 LOC123070353 LOC123061722 LOC123444271 LOC8069792 LOC100821502
Function* alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase-like 3 alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00310 Lysine degradation 2
sly00500 Starch and sucrose metabolism 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 3
sot00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
gma03083 Polycomb repressive complex 2
gma03250 Viral life cycle - HIV-1 2
gma03440 Homologous recombination 2
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01240 Biosynthesis of cofactors 3
gma00500 Starch and sucrose metabolism 3
gma04075 Plant hormone signal transduction 3
gma00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi01240 Biosynthesis of cofactors 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 6
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00591 Linoleic acid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00591 Linoleic acid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 8
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 3
sbi01200 Carbon metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi03050 Proteasome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00261 Monobactam biosynthesis 3
bdi00270 Cysteine and methionine metabolism 3
bdi00300 Lysine biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101257661 102599630 107788587 107780165 843319 100810333 100788193 103831524 100267346 18102525 25502785 107946418 107910680 107887239 106405641 106432554 102577968 4325575 103651265 123078800 123070353 123061722 123444271 8069792 100821502
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