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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101257890   E3 ubiquitin-protein ligase UPL4 
 sly-r.6   101257890   E3 ubiquitin-protein ligase UPL4 
 ath-u.5   UPL4   ubiquitin-protein ligase 4 
 gma-u.5   100798530   E3 ubiquitin-protein ligase UPL4 
 gma-u.5   100793534   E3 ubiquitin-protein ligase UPL4 
 vvi-u.5   100243094   E3 ubiquitin-protein ligase UPL4 
 ppo-u.5   18100234   E3 ubiquitin-protein ligase UPL4 
 ppo-u.5   7467604   E3 ubiquitin-protein ligase UPL4 
 mtr-u.5   25484050   E3 ubiquitin-protein ligase UPL4 
 osa-u.5   4339037   E3 ubiquitin-protein ligase UPL4 
 zma-u.5   103635779   E3 ubiquitin-protein ligase UPL4 

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Top 50 coexpressed genes to 101257890 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257890 (sly-u.5 coexpression data)

CoexMap"101257890"


slyLOC101257890 | Entrez gene ID : 101257890      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04120 [list] [network] Ubiquitin mediated proteolysis (151 genes)
GO BP
GO:0000209 [list] [network] protein polyubiquitination  (83 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (132 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (194 genes)  IEA  
Protein XP_010326023.2 [sequence] [blastp]
XP_025888822.2 [sequence] [blastp]
XP_025888823.2 [sequence] [blastp]
XP_069145329.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  plas 1,  mito 1,  cysk 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_010326023.2)
nucl 6,  chlo 1,  plas 1,  mito 1,  cysk 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_025888822.2)
nucl 6,  chlo 1,  plas 1,  mito 1,  cysk 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_025888823.2)
nucl 6,  chlo 1,  plas 1,  mito 1,  cysk 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_069145329.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_010326023.2)
other 5,  chlo 3  (predict for XP_025888822.2)
other 5,  chlo 3  (predict for XP_025888823.2)
other 5,  chlo 3  (predict for XP_069145329.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101257890
sly-r.6
for
101257890
ath-u.5
for
UPL4
gma-u.5
for
100798530
gma-u.5
for
100793534
vvi-u.5
for
100243094
ppo-u.5
for
18100234
ppo-u.5
for
7467604
mtr-u.5
for
25484050
osa-u.5
for
4339037
zma-u.5
for
103635779


Ortholog ID: 9107
Species sly sot nta nta ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi
Symbol LOC101257890 LOC102581024 LOC107821932 LOC107785213 UPL4 LOC100798530 LOC100793534 LOC103855501 LOC103850463 LOC100243094 LOC18100234 LOC7467604 LOC25484050 LOC107899676 LOC107948335 LOC106448641 LOC106401092 LOC102625174 LOC4339037 LOC103635779 LOC123136312 LOC123182296 LOC123445215 LOC8072557 LOC100831829
Function* E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 ubiquitin-protein ligase 4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04146 Peroxisome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
nta00592 alpha-Linolenic acid metabolism 4
nta03040 Spliceosome 2
nta00564 Glycerophospholipid metabolism 2
nta00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 5
nta00592 alpha-Linolenic acid metabolism 3
nta03040 Spliceosome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 6
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00540 Lipopolysaccharide biosynthesis 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 8
tae04141 Protein processing in endoplasmic reticulum 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101257890 102581024 107821932 107785213 831758 100798530 100793534 103855501 103850463 100243094 18100234 7467604 25484050 107899676 107948335 106448641 106401092 102625174 4339037 103635779 123136312 123182296 123445215 8072557 100831829
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