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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101258611   ubiquitin ligase complex subunit 1-like 
 sly-r.6   101258611   ubiquitin ligase complex subunit 1-like 
 sot-r.1   102588521   WD repeat-containing protein 82-B 
 nta-r.1   107800485   protein ANTHESIS POMOTING FACTOR 1 
 nta-r.1   107811301   protein ANTHESIS POMOTING FACTOR 1 
 ath-u.5   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100810444   protein ANTHESIS POMOTING FACTOR 1 
 gma-u.5   100807825   protein ANTHESIS POMOTING FACTOR 1 
 bra-r.6   103855351   protein ANTHESIS POMOTING FACTOR 1 
 vvi-u.5   100255744   protein ANTHESIS POMOTING FACTOR 1 
 ppo-u.5   18099200   protein ANTHESIS POMOTING FACTOR 1 
 mtr-u.5   25501403   protein ANTHESIS POMOTING FACTOR 1 
 ghi-r.1   107936580   protein ANTHESIS POMOTING FACTOR 1 
 ghi-r.1   107909448   protein ANTHESIS POMOTING FACTOR 1 
 bna-r.1   106406018   protein ANTHESIS POMOTING FACTOR 1-like 
 bna-r.1   106406033   protein ANTHESIS POMOTING FACTOR 1 
 bna-r.1   106416077   protein ANTHESIS POMOTING FACTOR 1 
 cit-r.1   102622131   protein ANTHESIS POMOTING FACTOR 1 
 osa-u.5   4343770   protein ANTHESIS POMOTING FACTOR 1 
 zma-u.5   100273578   Set1 complex component swd2 
 tae-r.2   123091105   protein ANTHESIS POMOTING FACTOR 1 
 tae-r.2   123096107   protein ANTHESIS POMOTING FACTOR 1 
 hvu-r.1   123447758   protein ANTHESIS POMOTING FACTOR 1 
 sbi-r.1   8060458   protein ANTHESIS POMOTING FACTOR 1 
 sbi-r.1   8081603   protein ANTHESIS POMOTING FACTOR 1 
 bdi-r.1   100832902   protein ANTHESIS POMOTING FACTOR 1 

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Top 50 coexpressed genes to 101258611 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101258611 (sly-u.5 coexpression data)

CoexMap"101258611"


slyLOC101258611 | Entrez gene ID : 101258611      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 1 1 1 1 2 3 1 1 1 2 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03015 [list] [network] mRNA surveillance pathway (129 genes)
GO BP
GO CC
GO:0048188 [list] [network] Set1C/COMPASS complex  (5 genes)  IEA  
GO MF
GO:0003682 [list] [network] chromatin binding  (150 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001315513.1 [sequence] [blastp]
XP_069149224.1 [sequence] [blastp]
XP_069149225.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001315513.1)
nucl 4,  cyto 4,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069149224.1)
nucl 6,  cyto 2,  chlo 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069149225.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001315513.1)
other 8  (predict for XP_069149224.1)
other 8  (predict for XP_069149225.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101258611
sly-r.6
for
101258611
sot-r.1
for
102588521
nta-r.1
for
107800485
nta-r.1
for
107811301
ath-u.5
for
AT5G66240
gma-u.5
for
100810444
gma-u.5
for
100807825
bra-r.6
for
103855351
vvi-u.5
for
100255744
ppo-u.5
for
18099200
mtr-u.5
for
25501403
ghi-r.1
for
107936580
ghi-r.1
for
107909448
bna-r.1
for
106406018
bna-r.1
for
106406033
bna-r.1
for
106416077
cit-r.1
for
102622131
osa-u.5
for
4343770
zma-u.5
for
100273578
tae-r.2
for
123091105
tae-r.2
for
123096107
hvu-r.1
for
123447758
sbi-r.1
for
8060458
sbi-r.1
for
8081603
bdi-r.1
for
100832902


Ortholog ID: 10422
Species sly sot nta nta ath gma gma bra vvi ppo mtr ghi ghi bna bna bna cit osa zma tae tae hvu sbi sbi bdi
Symbol LOC101258611 LOC102588521 LOC107800485 LOC107811301 AT5G66240 LOC100810444 LOC100807825 LOC103855351 LOC100255744 LOC18099200 LOC25501403 LOC107936580 LOC107909448 LOC106406018 LOC106406033 LOC106416077 LOC102622131 LOC4343770 LOC100273578 LOC123091105 LOC123096107 LOC123447758 LOC8060458 LOC8081603 LOC100832902
Function* ubiquitin ligase complex subunit 1-like WD repeat-containing protein 82-B protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 Transducin/WD40 repeat-like superfamily protein protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1-like protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 Set1 complex component swd2 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 3
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 4
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi04075 Plant hormone signal transduction 2
sbi03420 Nucleotide excision repair 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101258611 102588521 107800485 107811301 836756 100810444 100807825 103855351 100255744 18099200 25501403 107936580 107909448 106406018 106406033 106416077 102622131 4343770 100273578 123091105 123096107 123447758 8060458 8081603 100832902
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