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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101260000   AP-1 complex subunit sigma-2 
 sly-r.6   101260000   AP-1 complex subunit sigma-2 
 sly-m.5   101260000   AP-1 complex subunit sigma-2 
 sot-r.1   102603184   AP-1 complex subunit sigma-1 
 nta-r.1   107829888   AP-1 complex subunit sigma-1-like 
 nta-r.1   107769310   AP-1 complex subunit sigma-1 
 ath-u.5   AP19   associated protein 19 
 ath-u.5   AT4G35410   Clathrin adaptor complex small chain family protein 
 gma-u.5   100306122   clathrin adaptor protein complex small subunit 
 gma-u.5   100499666   putative AP-1 complex subunit sigma-2 
 bra-r.6   103845962   AP-1 complex subunit sigma-1 
 bra-r.6   103828348   AP-1 complex subunit sigma-2 
 vvi-u.5   100257590   AP-1 complex subunit sigma-1-like 
 vvi-u.5   100251707   AP-1 complex subunit sigma-2 
 ppo-u.5   112323480   AP-1 complex subunit sigma-1 
 ppo-u.5   7464913   AP-1 complex subunit sigma-1 
 mtr-u.5   11428414   AP-1 complex subunit sigma-1 
 ghi-r.1   121221089   AP-1 complex subunit sigma-1 
 ghi-r.1   107940997   AP-1 complex subunit sigma-1 
 bna-r.1   106374182   AP-1 complex subunit sigma-2-like 
 bna-r.1   125608358   AP-1 complex subunit sigma-2-like 
 bna-r.1   106447197   AP-1 complex subunit sigma-1 
 cit-r.1   102626824   AP-1 complex subunit sigma-1 
 osa-u.5   4334331   AP-1 complex subunit sigma-1 
 zma-u.5   100285461   uncharacterized LOC100285461 
 zma-u.5   100281970   AP-1 complex subunit sigma-2 
 tae-r.2   123105290   AP-1 complex subunit sigma-1 
 tae-r.2   123113562   AP-1 complex subunit sigma-1 
 tae-r.2   123123091   AP-1 complex subunit sigma-1 
 hvu-r.1   123452549   AP-1 complex subunit sigma-1 
 sbi-r.1   110431764   AP-1 complex subunit sigma-1 
 bdi-r.1   100833430   AP-1 complex subunit sigma-1 
 cre-r.1   CHLRE_09g394100v5   uncharacterized protein 

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Top 50 coexpressed genes to 101260000 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101260000 (sly-u.5 coexpression data)

CoexMap"101260000"


slyLOC101260000 | Entrez gene ID : 101260000      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 2 2 2 2 2 2 1 2 3 1 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04142 [list] [network] Lysosome (84 genes)
GO BP
GO:0006886 [list] [network] intracellular protein transport  (272 genes)  IEA  
GO:0016192 [list] [network] vesicle-mediated transport  (469 genes)  IEA  
GO CC
GO:0030121 [list] [network] AP-1 adaptor complex  (3 genes)  IEA  
GO:0030117 [list] [network] membrane coat  (75 genes)  IEA  
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0035615 [list] [network] clathrin adaptor activity  (7 genes)  IEA  
Protein XP_004249858.1 [sequence] [blastp]
XP_004249859.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 1,  cyto 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_004249858.1)
nucl 4,  chlo 2,  mito 2,  chlo_mito 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_004249859.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_004249858.1)
mito 8  (predict for XP_004249859.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101260000
sly-r.6
for
101260000
sly-m.5
for
101260000
sot-r.1
for
102603184
nta-r.1
for
107829888
nta-r.1
for
107769310
ath-u.5
for
AP19
ath-u.5
for
AT4G35410
gma-u.5
for
100306122
gma-u.5
for
100499666
bra-r.6
for
103845962
bra-r.6
for
103828348
vvi-u.5
for
100257590
vvi-u.5
for
100251707
ppo-u.5
for
112323480
ppo-u.5
for
7464913
mtr-u.5
for
11428414
ghi-r.1
for
121221089
ghi-r.1
for
107940997
bna-r.1
for
106374182
bna-r.1
for
125608358
bna-r.1
for
106447197
cit-r.1
for
102626824
osa-u.5
for
4334331
zma-u.5
for
100285461
zma-u.5
for
100281970
tae-r.2
for
123105290
tae-r.2
for
123113562
tae-r.2
for
123123091
hvu-r.1
for
123452549
sbi-r.1
for
110431764
bdi-r.1
for
100833430
cre-r.1
for
CHLRE_09g394100v5


Ortholog ID: 4678
Species sly sot nta nta ath ath gma gma bra bra vvi vvi ppo ppo mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC101260000 LOC102603184 LOC107829888 LOC107769310 AP19 AT4G35410 LOC100306122 LOC100499666 LOC103845962 LOC103828348 LOC100257590 LOC100251707 LOC112323480 LOC7464913 LOC11428414 LOC107929718 LOC107908992 LOC106374182 LOC125608358 LOC106447197 LOC102626824 LOC4334331 LOC100285461 LOC100281970 LOC123105290 LOC123113562 LOC123123091 LOC123452549 LOC110431764 LOC100833430 CHLRE_09g394100v5
Function* AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1-like AP-1 complex subunit sigma-1 associated protein 19 Clathrin adaptor complex small chain family protein clathrin adaptor protein complex small subunit putative AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1-like AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-2-like AP-1 complex subunit sigma-2-like AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 uncharacterized LOC100285461 AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 7
sly04141 Protein processing in endoplasmic reticulum 3
sly00510 N-Glycan biosynthesis 2
sly00513 Various types of N-glycan biosynthesis 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 4
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 3
nta04142 Lysosome 2
nta04070 Phosphatidylinositol signaling system 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
nta04142 Lysosome 2
nta03050 Proteasome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 3
ath03060 Protein export 2
ath00513 Various types of N-glycan biosynthesis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma00190 Oxidative phosphorylation 4
gma04142 Lysosome 4
gma04144 Endocytosis 3
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma04142 Lysosome 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03060 Protein export 5
bra04141 Protein processing in endoplasmic reticulum 4
bra04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 3
mtr04142 Lysosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 6
bna04145 Phagosome 6
bna04141 Protein processing in endoplasmic reticulum 2
bna04144 Endocytosis 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 6
tae04144 Endocytosis 4
tae04145 Phagosome 3
tae04142 Lysosome 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 5
tae04141 Protein processing in endoplasmic reticulum 5
tae00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 4
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi04144 Endocytosis 3
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04142 Lysosome 6
cre00190 Oxidative phosphorylation 5
cre04145 Phagosome 5
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101260000 102603184 107829888 107769310 816245 829694 100306122 100499666 103845962 103828348 100257590 100251707 112323480 7464913 11428414 107929718 107908992 106374182 125608358 106447197 102626824 4334331 100285461 100281970 123105290 123113562 123123091 123452549 110431764 100833430 5720128
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