ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123113562	AP-1 complex subunit sigma-1
tae-r.2	123105290	AP-1 complex subunit sigma-1
tae-r.2	123123091	AP-1 complex subunit sigma-1
hvu-r.1	123452549	AP-1 complex subunit sigma-1
bdi-r.1	100833430	AP-1 complex subunit sigma-1
osa-u.5	4334331	AP-1 complex subunit sigma-1
zma-u.5	100281970	AP-1 complex subunit sigma-2
zma-u.5	100285461	uncharacterized LOC100285461
sbi-r.1	110431764	AP-1 complex subunit sigma-1
ath-u.5	AP19	associated protein 19
ath-u.5	AT4G35410	Clathrin adaptor complex small chain family protein
gma-u.5	100499666	putative AP-1 complex subunit sigma-2
gma-u.5	100306122	clathrin adaptor protein complex small subunit
sly-u.5	101260000	AP-1 complex subunit sigma-2
bra-r.6	103828348	AP-1 complex subunit sigma-2
bra-r.6	103845962	AP-1 complex subunit sigma-1
vvi-u.5	100257590	AP-1 complex subunit sigma-1-like
vvi-u.5	100251707	AP-1 complex subunit sigma-2
ppo-u.5	112323480	AP-1 complex subunit sigma-1
ppo-u.5	7464913	AP-1 complex subunit sigma-1
mtr-u.5	11428414	AP-1 complex subunit sigma-1
ghi-r.1	121221089	AP-1 complex subunit sigma-1
ghi-r.1	107940997	AP-1 complex subunit sigma-1
bna-r.1	125608358	AP-1 complex subunit sigma-2-like
bna-r.1	106447197	AP-1 complex subunit sigma-1
bna-r.1	106390511	AP-1 complex subunit sigma-1
sot-r.1	102603184	AP-1 complex subunit sigma-1
cit-r.1	102626824	AP-1 complex subunit sigma-1
nta-r.1	107769310	AP-1 complex subunit sigma-1
nta-r.1	107829888	AP-1 complex subunit sigma-1-like
cre-r.1	CHLRE_09g394100v5	uncharacterized protein

Top 50 coexpressed genes to 123113562 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123113562 (tae-r.2 coexpression data)

CoexMap"123113562"

[Cytoscape]

Annotation

functional annotation

KEGG

taes04142 [list] [network] Lysosome (228 genes)

GO BP

GO:0006886 [list] [network] intracellular protein transport	(789 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(1129 genes)	IEA

GO CC

GO:0030121 [list] [network] AP-1 adaptor complex	(9 genes)	IEA
GO:0030117 [list] [network] membrane coat	(220 genes)	IEA

GO MF

GO:0035615 [list] [network] clathrin adaptor activity

(8 genes)

IEA

Protein

XP_044390774.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, chlo_mito 5, mito 2

(predict for XP_044390774.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_044390774.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123113562	tae-r.2 for 123105290	tae-r.2 for 123123091	hvu-r.1 for 123452549	bdi-r.1 for 100833430	osa-u.5 for 4334331	zma-u.5 for 100281970	zma-u.5 for 100285461	sbi-r.1 for 110431764	ath-u.5 for AP19	ath-u.5 for AT4G35410	gma-u.5 for 100499666	gma-u.5 for 100306122	sly-u.5 for 101260000	bra-r.6 for 103828348	bra-r.6 for 103845962	vvi-u.5 for 100257590	vvi-u.5 for 100251707	ppo-u.5 for 112323480	ppo-u.5 for 7464913	mtr-u.5 for 11428414	ghi-r.1 for 121221089	ghi-r.1 for 107940997	bna-r.1 for 125608358	bna-r.1 for 106447197	bna-r.1 for 106390511	sot-r.1 for 102603184	cit-r.1 for 102626824	nta-r.1 for 107769310	nta-r.1 for 107829888	cre-r.1 for CHLRE_09g394100v5

Ortholog

Ortholog ID: 4678

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

AP19

Function^*

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-2

uncharacterized LOC100285461

AP-1 complex subunit sigma-1

associated protein 19

Clathrin adaptor complex small chain family protein

putative AP-1 complex subunit sigma-2

clathrin adaptor protein complex small subunit

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-1-like

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-2-like

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-2-like

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-1-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	5
tae04141	Protein processing in endoplasmic reticulum	5
tae00513	Various types of N-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	6
tae04144	Endocytosis	4
tae04145	Phagosome	3
tae04142	Lysosome	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae04130	SNARE interactions in vesicular transport	3
tae04145	Phagosome	3
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi04144	Endocytosis	3
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	3
ath03060	Protein export	2
ath00513	Various types of N-glycan biosynthesis	2
ath04141	Protein processing in endoplasmic reticulum	2
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma04142	Lysosome	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma00190	Oxidative phosphorylation	4
gma04142	Lysosome	4
gma04144	Endocytosis	3
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	7
sly04141	Protein processing in endoplasmic reticulum	3
sly00510	N-Glycan biosynthesis	2
sly00513	Various types of N-glycan biosynthesis	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra03060	Protein export	5
bra04141	Protein processing in endoplasmic reticulum	4
bra04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	3
mtr04142	Lysosome	3
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6
bna04145	Phagosome	6
bna04141	Protein processing in endoplasmic reticulum	2
bna04144	Endocytosis	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	4
sot00190	Oxidative phosphorylation	3
sot04145	Phagosome	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04142	Lysosome	2
nta03050	Proteasome	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	3
nta04142	Lysosome	2
nta04070	Phosphatidylinositol signaling system	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	6
cre00190	Oxidative phosphorylation	5
cre04145	Phagosome	5
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

123113562

123105290

123123091

123452549

100833430

4334331

100281970

100285461

110431764

816245

829694

100499666

100306122

101260000

103828348

103845962

100257590

100251707

112323480

7464913

11428414

107929718

107908992

125608358

106447197

106374182

102603184

102626824

107769310

107829888

5720128

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	1	2	1	2	2	1	2	2	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123113562 (tae-r.2 coexpression data)

Top 50 enrichment test to 123113562 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**