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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101262501   large ribosomal subunit protein uL3m 
 sly-r.6   101262501   large ribosomal subunit protein uL3m 
 sly-m.5   101262501   large ribosomal subunit protein uL3m 
 sot-r.1   102580539   50S ribosomal protein L3-2, chloroplastic-like 
 sot-r.1   102579491   50S ribosomal protein L3-2, chloroplastic-like 
 nta-r.1   107831882   large ribosomal subunit protein uL3m 
 nta-r.1   107830586   large ribosomal subunit protein uL3m 
 nta-r.1   107825812   large ribosomal subunit protein uL3m 
 ath-u.5   RPL3P   ribosomal protein L3 plastid 
 gma-u.5   100794289   50S ribosomal protein L3-2, mitochondrial 
 gma-u.5   100775496   50S ribosomal protein L3-2, mitochondrial 
 bra-r.6   103869683   50S ribosomal protein L3-2, mitochondrial 
 bra-r.6   103839203   50S ribosomal protein L3-2, mitochondrial 
 vvi-u.5   100257955   large ribosomal subunit protein uL3m 
 ppo-u.5   18101736   50S ribosomal protein L3-2, mitochondrial 
 ppo-u.5   7477200   50S ribosomal protein L3-2, mitochondrial 
 mtr-u.5   25487658   50S ribosomal protein L3-2, mitochondrial 
 mtr-u.5   11424090   50S ribosomal protein L3-2, mitochondrial 
 mtr-u.5   11422949   50S ribosomal protein L3-2, mitochondrial 
 ghi-r.1   107951544   50S ribosomal protein L3-2, mitochondrial 
 ghi-r.1   107910520   50S ribosomal protein L3-2, mitochondrial 
 bna-r.1   111207170   50S ribosomal protein L3-2, mitochondrial 
 bna-r.1   106452105   50S ribosomal protein L3-2, mitochondrial 
 cit-r.1   102613999   50S ribosomal protein L3-2, mitochondrial 
 osa-u.5   4327104   large ribosomal subunit protein uL3m 
 zma-u.5   100191826   50S ribosomal protein L3, mitochondrial-like 
 tae-r.2   123060880   50S ribosomal protein L3-2, mitochondrial 
 tae-r.2   123069537   50S ribosomal protein L3-2, mitochondrial 
 tae-r.2   123078023   50S ribosomal protein L3-2, mitochondrial 
 hvu-r.1   123443365   50S ribosomal protein L3-2, mitochondrial 
 sbi-r.1   8085797   50S ribosomal protein L3-2, chloroplastic 
 cre-r.1   CHLRE_01g022250v5   uncharacterized protein 

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Top 50 coexpressed genes to 101262501 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101262501 (sly-u.5 coexpression data)

CoexMap"101262501"


slyLOC101262501 | Entrez gene ID : 101262501      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi cre bdi
Paralog 3 2 3 1 2 2 1 2 3 2 2 1 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03010 [list] [network] Ribosome (6225 genes)
GO BP
GO:0006412 [list] [network] translation  (492 genes)  IEA  
GO CC
GO:0005762 [list] [network] mitochondrial large ribosomal subunit  (22 genes)  IEA  
GO:0005840 [list] [network] ribosome  (354 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (342 genes)  IEA  
Protein XP_004235910.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  mito 1  (predict for XP_004235910.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for XP_004235910.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101262501
sly-r.6
for
101262501
sly-m.5
for
101262501
sot-r.1
for
102580539
sot-r.1
for
102579491
nta-r.1
for
107831882
nta-r.1
for
107830586
nta-r.1
for
107825812
ath-u.5
for
RPL3P
gma-u.5
for
100794289
gma-u.5
for
100775496
bra-r.6
for
103869683
bra-r.6
for
103839203
vvi-u.5
for
100257955
ppo-u.5
for
18101736
ppo-u.5
for
7477200
mtr-u.5
for
25487658
mtr-u.5
for
11424090
mtr-u.5
for
11422949
ghi-r.1
for
107951544
ghi-r.1
for
107910520
bna-r.1
for
111207170
bna-r.1
for
106452105
cit-r.1
for
102613999
osa-u.5
for
4327104
zma-u.5
for
100191826
tae-r.2
for
123060880
tae-r.2
for
123069537
tae-r.2
for
123078023
hvu-r.1
for
123443365
sbi-r.1
for
8085797
cre-r.1
for
CHLRE_01g022250v5


Ortholog ID: 5742
Species sly sot sot nta nta nta ath gma gma bra bra vvi ppo ppo mtr mtr mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi cre
Symbol LOC101262501 LOC102580539 LOC102579491 LOC107831882 LOC107830586 LOC107761018 RPL3P LOC100794289 LOC100775496 LOC103869683 LOC103839203 LOC100257955 LOC18101736 LOC7477200 LOC25487658 LOC11424090 LOC11422949 LOC107951544 LOC107910520 LOC111207170 LOC125609012 LOC106411286 LOC102613999 LOC4327104 LOC100191826 LOC123060880 LOC123069537 LOC123078023 LOC123443365 LOC8085797 CHLRE_01g022250v5
Function* large ribosomal subunit protein uL3m 50S ribosomal protein L3-2, chloroplastic-like 50S ribosomal protein L3-2, chloroplastic-like large ribosomal subunit protein uL3m large ribosomal subunit protein uL3m large ribosomal subunit protein uL3m-like ribosomal protein L3 plastid 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial large ribosomal subunit protein uL3m 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial-like 50S ribosomal protein L3-2, mitochondrial-like 50S ribosomal protein L3-2, mitochondrial large ribosomal subunit protein uL3m 50S ribosomal protein L3, mitochondrial-like 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, mitochondrial 50S ribosomal protein L3-2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03060 Protein export 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03010 Ribosome 3
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03010 Ribosome 3
gma03040 Spliceosome 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi04626 Plant-pathogen interaction 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101262501 102580539 102579491 107831882 107830586 107761018 821011 100794289 100775496 103869683 103839203 100257955 18101736 7477200 25487658 11424090 11422949 107951544 107910520 111207170 125609012 106411286 102613999 4327104 100191826 123060880 123069537 123078023 123443365 8085797 5715221
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