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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263246   RNA polymerase sigma factor sigB 
 sly-r.6   101263246   RNA polymerase sigma factor sigB 
 ath-u.5   SIG2   RNApolymerase sigma subunit 2 
 gma-u.5   106799192   RNA polymerase sigma factor sigB 
 gma-u.5   100788815   RNA polymerase sigma factor sigB 
 vvi-u.5   100243819   RNA polymerase sigma factor sigB 
 ppo-u.5   7482402   RNA polymerase sigma factor sigB 
 ppo-u.5   7491092   RNA polymerase sigma factor sigB 
 mtr-u.5   11419288   RNA polymerase sigma factor sigB 
 osa-u.5   4332388   RNA polymerase sigma factor sigB 
 osa-u.5   4350441   RNA polymerase sigma factor sigB 
 zma-u.5   541716   sigma factor SIG2A 
 zma-u.5   541717   sigma-like factor2B 

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Top 50 coexpressed genes to 101263246 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263246 (sly-u.5 coexpression data)

CoexMap"101263246"


slyLOC101263246 | Entrez gene ID : 101263246      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 2 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (51 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1125 genes)  IEA  
Protein XP_004229543.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for XP_004229543.2)
Subcellular
localization
TargetP
chlo 3  (predict for XP_004229543.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263246

.
sly-r.6
for
101263246

.
ath-u.5
for
SIG2

.
gma-u.5
for
106799192

.
gma-u.5
for
100788815

.
vvi-u.5
for
100243819

.
ppo-u.5
for
7482402

.
ppo-u.5
for
7491092

.
mtr-u.5
for
11419288

.
osa-u.5
for
4332388

.
osa-u.5
for
4350441

.
zma-u.5
for
541716

.
zma-u.5
for
541717

.


Ortholog ID: 4810
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol SIG2 LOC100788815 LOC106799192 LOC101263246 LOC4332388 LOC4350441 LOC541716 LOC541717 LOC103871598 LOC103836385 LOC100243819 LOC7491092 LOC7482402 LOC11419288 LOC123097924 LOC123085424 LOC123448599 LOC123449035 LOC107962673 LOC107936313 LOC106383128 LOC106346327 CHLRE_03g194950v5 LOC8081518 LOC8155313 LOC102585657 LOC102623860 LOC100835147 LOC100828028 LOC107807767 LOC107765016
Function* RNApolymerase sigma subunit 2 RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB sigma factor SIG2A sigma-like factor2B RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB uncharacterized protein RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837376 100788815 106799192 101263246 4332388 4350441 541716 541717 103871598 103836385 100243819 7491092 7482402 11419288 123097924 123085424 123448599 123449035 107962673 107936313 106383128 106346327 5718733 8081518 8155313 102585657 102623860 100835147 100828028 107807767 107765016
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