ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106346327	RNA polymerase sigma factor sigB
bna-r.1	106383128	RNA polymerase sigma factor sigB-like
bna-r.1	106362293	RNA polymerase sigma factor sigB-like
bna-r.1	106414584	RNA polymerase sigma factor sigB
bra-r.6	103871598	RNA polymerase sigma factor sigB
bra-r.6	103836385	RNA polymerase sigma factor sigB
ath-u.5	SIG2	RNApolymerase sigma subunit 2
ghi-r.1	107963345	RNA polymerase sigma factor sigB
ghi-r.1	121204734	RNA polymerase sigma factor sigB
ghi-r.1	107962673	RNA polymerase sigma factor sigB
cit-r.1	102623860	RNA polymerase sigma factor sigB
gma-u.5	106799192	RNA polymerase sigma factor sigB
gma-u.5	100788815	RNA polymerase sigma factor sigB
vvi-u.5	100243819	RNA polymerase sigma factor sigB
ppo-u.5	7491092	RNA polymerase sigma factor sigB
ppo-u.5	7482402	RNA polymerase sigma factor sigB
mtr-u.5	11419288	RNA polymerase sigma factor sigB
sly-u.5	101263246	RNA polymerase sigma factor sigB
sot-r.1	102585657	RNA polymerase sigma factor sigB
nta-r.1	107765016	RNA polymerase sigma factor sigB-like
nta-r.1	107788694	RNA polymerase sigma factor sigB
nta-r.1	107807767	RNA polymerase sigma factor sigB
osa-u.5	4332388	RNA polymerase sigma factor sigB
osa-u.5	4350441	RNA polymerase sigma factor sigB
zma-u.5	541716	sigma factor SIG2A
zma-u.5	541717	sigma-like factor2B
tae-r.2	123092616	RNA polymerase sigma factor sigB
tae-r.2	123085964	RNA polymerase sigma factor sigB
tae-r.2	123085424	RNA polymerase sigma factor sigB
hvu-r.1	123448599	RNA polymerase sigma factor sigB
hvu-r.1	123449035	RNA polymerase sigma factor sigB-like
sbi-r.1	8081518	RNA polymerase sigma factor sigB
sbi-r.1	8155313	RNA polymerase sigma factor sigB
bdi-r.1	100835147	RNA polymerase sigma factor sigB
bdi-r.1	100828028	RNA polymerase sigma factor sigB
cre-r.1	CHLRE_03g194950v5	uncharacterized protein

Top 50 coexpressed genes to 106346327 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106346327 (bna-r.1 coexpression data)

CoexMap"106346327"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation	(224 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(5322 genes)	IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(3791 genes)

IEA

Protein

XP_048638019.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 3, cysk 1, nucl_plas 1

(predict for XP_048638019.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_048638019.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106346327	bna-r.1 for 106383128	bna-r.1 for 106362293	bna-r.1 for 106414584	bra-r.6 for 103871598	bra-r.6 for 103836385	ath-u.5 for SIG2	ghi-r.1 for 107963345	ghi-r.1 for 121204734	ghi-r.1 for 107962673	cit-r.1 for 102623860	gma-u.5 for 106799192	gma-u.5 for 100788815	vvi-u.5 for 100243819	ppo-u.5 for 7491092	ppo-u.5 for 7482402	mtr-u.5 for 11419288	sly-u.5 for 101263246	sot-r.1 for 102585657	nta-r.1 for 107765016	nta-r.1 for 107788694	nta-r.1 for 107807767	osa-u.5 for 4332388	osa-u.5 for 4350441	zma-u.5 for 541716	zma-u.5 for 541717	tae-r.2 for 123092616	tae-r.2 for 123085964	tae-r.2 for 123085424	hvu-r.1 for 123448599	hvu-r.1 for 123449035	sbi-r.1 for 8081518	sbi-r.1 for 8155313	bdi-r.1 for 100835147	bdi-r.1 for 100828028	cre-r.1 for CHLRE_03g194950v5

Ortholog

Ortholog ID: 4810

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SIG2

Function^*