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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g194950v5   uncharacterized protein 
 ath-u.5   SIG2   RNApolymerase sigma subunit 2 
 gma-u.5   106799192   RNA polymerase sigma factor sigB 
 gma-u.5   100788815   RNA polymerase sigma factor sigB 
 sly-u.5   101263246   RNA polymerase sigma factor sigB 
 osa-u.5   4332388   RNA polymerase sigma factor sigB 
 osa-u.5   4350441   RNA polymerase sigma factor sigB 
 zma-u.5   541716   sigma factor SIG2A 
 zma-u.5   541717   sigma-like factor2B 
 bra-r.6   103871598   RNA polymerase sigma factor sigB 
 bra-r.6   103836385   RNA polymerase sigma factor sigB 
 vvi-u.5   100243819   RNA polymerase sigma factor sigB 
 ppo-u.5   7482402   RNA polymerase sigma factor sigB 
 ppo-u.5   7491092   RNA polymerase sigma factor sigB 
 mtr-u.5   11419288   RNA polymerase sigma factor sigB 
 tae-r.2   123085424   RNA polymerase sigma factor sigB 
 tae-r.2   123097924   RNA polymerase sigma factor sigB 
 tae-r.2   123085964   RNA polymerase sigma factor sigB 
 hvu-r.1   123448599   RNA polymerase sigma factor sigB 
 hvu-r.1   123449035   RNA polymerase sigma factor sigB-like 
 ghi-r.1   107963345   RNA polymerase sigma factor sigB 
 ghi-r.1   121204734   RNA polymerase sigma factor sigB 
 ghi-r.1   107962673   RNA polymerase sigma factor sigB 
 bna-r.1   106346327   RNA polymerase sigma factor sigB 
 bna-r.1   106383128   RNA polymerase sigma factor sigB-like 
 bna-r.1   106362293   RNA polymerase sigma factor sigB-like 
 sbi-r.1   8081518   RNA polymerase sigma factor sigB 
 sbi-r.1   8155313   RNA polymerase sigma factor sigB 
 sot-r.1   102585657   RNA polymerase sigma factor sigB 
 cit-r.1   102623860   RNA polymerase sigma factor sigB 
 bdi-r.1   100835147   RNA polymerase sigma factor sigB 
 bdi-r.1   100828028   RNA polymerase sigma factor sigB 
 nta-r.1   107765016   RNA polymerase sigma factor sigB-like 
 nta-r.1   107788694   RNA polymerase sigma factor sigB 
 nta-r.1   107807767   RNA polymerase sigma factor sigB 

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Top 50 coexpressed genes to CHLRE_03g194950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g194950v5 (cre-r.1 coexpression data)

CoexMap"5718733"


creCHLRE_03g194950v5 | Entrez gene ID : 5718733      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 2 2 2 1 2 1 3 2 3 3 2 1 1 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (39 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (142 genes)  IEA  
Protein XP_001693275.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_001693275.1)
Subcellular
localization
TargetP
chlo 6,  mito 4  (predict for XP_001693275.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g194950v5
ath-u.5
for
SIG2
gma-u.5
for
106799192
gma-u.5
for
100788815
sly-u.5
for
101263246
osa-u.5
for
4332388
osa-u.5
for
4350441
zma-u.5
for
541716
zma-u.5
for
541717
bra-r.6
for
103871598
bra-r.6
for
103836385
vvi-u.5
for
100243819
ppo-u.5
for
7482402
ppo-u.5
for
7491092
mtr-u.5
for
11419288
tae-r.2
for
123085424
tae-r.2
for
123097924
tae-r.2
for
123085964
hvu-r.1
for
123448599
hvu-r.1
for
123449035
ghi-r.1
for
107963345
ghi-r.1
for
121204734
ghi-r.1
for
107962673
bna-r.1
for
106346327
bna-r.1
for
106383128
bna-r.1
for
106362293
sbi-r.1
for
8081518
sbi-r.1
for
8155313
sot-r.1
for
102585657
cit-r.1
for
102623860
bdi-r.1
for
100835147
bdi-r.1
for
100828028
nta-r.1
for
107765016
nta-r.1
for
107788694
nta-r.1
for
107807767


Ortholog ID: 4810
Species cre ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sbi sot cit bdi bdi nta nta nta
Symbol CHLRE_03g194950v5 SIG2 LOC106799192 LOC100788815 LOC101263246 LOC4332388 LOC4350441 LOC541716 LOC541717 LOC103871598 LOC103836385 LOC100243819 LOC7482402 LOC7491092 LOC11419288 LOC123085424 LOC123097924 LOC123092616 LOC123448599 LOC123449035 LOC107963345 LOC107962673 LOC107936313 LOC106346327 LOC106383128 LOC106362293 LOC8081518 LOC8155313 LOC102585657 LOC102623860 LOC100835147 LOC100828028 LOC107765016 LOC107788694 LOC107807767
Function* uncharacterized protein RNApolymerase sigma subunit 2 RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB sigma factor SIG2A sigma-like factor2B RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB-like RNA polymerase sigma factor sigB RNA polymerase sigma factor sigB
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 3
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718733 837376 106799192 100788815 101263246 4332388 4350441 541716 541717 103871598 103836385 100243819 7482402 7491092 11419288 123085424 123097924 123092616 123448599 123449035 107963345 107962673 107936313 106346327 106383128 106362293 8081518 8155313 102585657 102623860 100835147 100828028 107765016 107788694 107807767
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