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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5  101264459  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 sly-r.6  101264459  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 ath-u.5  AT1G16480  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100806492  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 vvi-u.5  100256124  pentatricopeptide repeat-containing protein At4g14050, mitochondrial 
 vvi-u.5  100854377  pentatricopeptide repeat-containing protein At4g33170 
 mtr-u.5  11438958  pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-u.5  4351121  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 zma-u.5  103637747  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 

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Top 50 coexpressed genes to 101264459 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101264459 (sly-u.5 coexpression data)

CoexMap"101264459"


slyLOC101264459 | Entrez gene ID : 101264459
Species sly ath gma vvi mtr osa zma sbi nta bra cre hvu cit bdi ppo sot tae bna ghi
Paralog 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004229547.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_004229547.2)
Subcellular
localization
TargetP
mito 8  (predict for XP_004229547.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sly-u.5
for
101264459

.

sly-r.6
for
101264459

.

ath-u.5
for
AT1G16480

.

gma-u.5
for
100806492

.

vvi-u.5
for
100256124

.

vvi-u.5
for
100854377

.

mtr-u.5
for
11438958

.

osa-u.5
for
4351121

.

zma-u.5
for
103637747

.


Ortholog ID: 10458
Species ath gma sly osa zma bra vvi vvi mtr tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G16480 LOC100806492 LOC101264459 LOC4351121 LOC103637747 LOC103835997 LOC100854377 LOC100256124 LOC11438958 LOC123096831 LOC123448308 LOC107919883 LOC107895129 LOC106387584 LOC106402965 LOC8055119 LOC102588182 LOC102623732 LOC100841964 LOC107779411 LOC107769960
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At4g33170 pentatricopeptide repeat-containing protein At4g14050, mitochondrial pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial putative pentatricopeptide repeat-containing protein At5g52630 pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like pentatricopeptide repeat-containing protein At4g13650-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838218 100806492 101264459 4351121 103637747 103835997 100854377 100256124 11438958 123096831 123448308 107919883 107895129 106387584 106402965 8055119 102588182 102623732 100841964 107779411 107769960
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