Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101266956   putative pentatricopeptide repeat-containing protein At3g08820 
 sly-r.6   101266956   putative pentatricopeptide repeat-containing protein At3g08820 
 vvi-u.5   100250734   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 

close


Top 50 coexpressed genes to 101266956 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 101266956 (sly-u.5 coexpression data)

CoexMap"101266956"


slyLOC101266956 | Entrez gene ID : 101266956      
Species sly vvi mtr cit osa bna ghi hvu gma ppo tae bra nta ath sbi zma cre sot bdi
Paralog 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_010323756.1 [sequence] [blastp]
XP_010323757.1 [sequence] [blastp]
XP_069143617.1 [sequence] [blastp]
XP_069143618.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  nucl 2,  cyto_mito 1  (predict for XP_010323756.1)
chlo 5,  mito 2,  nucl 2,  cyto_mito 1  (predict for XP_010323757.1)
chlo 5,  mito 2,  nucl 2,  cyto_mito 1  (predict for XP_069143617.1)
chlo 5,  mito 2,  nucl 2,  cyto_mito 1  (predict for XP_069143618.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_010323756.1)
chlo 6,  other 4  (predict for XP_010323757.1)
chlo 6,  other 4  (predict for XP_069143617.1)
chlo 6,  other 4  (predict for XP_069143618.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101266956

.
sly-r.6
for
101266956

.
vvi-u.5
for
100250734

.


Ortholog ID: 20071
Species sly vvi sot nta nta
Symbol LOC101266956 LOC100250734 LOC102578778 LOC107809295 LOC107817850
Function* putative pentatricopeptide repeat-containing protein At3g08820 pentatricopeptide repeat-containing protein At1g08070, chloroplastic putative pentatricopeptide repeat-containing protein At3g08820 putative pentatricopeptide repeat-containing protein At3g08820 zinc finger CCCH domain-containing protein 12-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04070 Phosphatidylinositol signaling system 4
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101266956 100250734 102578778 107809295 107817850
The preparation time of this page was 0.0 [sec].