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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102580985   E3 ubiquitin-protein ligase RFWD3 
 sly-u.5   101258298   uncharacterized LOC101258298 
 ath-u.5   AT5G03450   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100817687   E3 ubiquitin-protein ligase RFWD3 
 gma-u.5   100818898   E3 ubiquitin-protein ligase RFWD3 
 vvi-u.5   100241876   uncharacterized LOC100241876 
 vvi-u.5   109123052   uncharacterized LOC109123052 
 ppo-u.5   7463458   uncharacterized LOC7463458 
 ppo-u.5   18100140   uncharacterized LOC18100140 
 mtr-u.5   11421492   E3 ubiquitin-protein ligase RFWD3 
 osa-u.5   9271783   uncharacterized LOC9271783 
 osa-u.5   4349282   uncharacterized LOC4349282 
 zma-u.5   103639105   uncharacterized LOC103639105 
 zma-u.5   118473395   E3 ubiquitin-protein ligase RFWD3-like 
 zma-u.5   100286194   uncharacterized LOC100286194 

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Top 50 coexpressed genes to 102580985 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102580985 (sot-r.1 coexpression data)

CoexMap"102580985"


sotLOC102580985 | Entrez gene ID : 102580985    
Species sot sly ath gma vvi ppo mtr osa zma tae hvu ghi bdi cit bra cre sbi bna nta
Paralog 1 1 1 2 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0036297 [list] [network] interstrand cross-link repair  (14 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (305 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2556 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (358 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006354380.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  vacu 1  (predict for XP_006354380.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006354380.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102580985

.
sly-u.5
for
101258298

.
ath-u.5
for
AT5G03450

.
gma-u.5
for
100817687

.
gma-u.5
for
100818898

.
vvi-u.5
for
100241876

.
vvi-u.5
for
109123052

.
ppo-u.5
for
7463458

.
ppo-u.5
for
18100140

.
mtr-u.5
for
11421492

.
osa-u.5
for
9271783

.
osa-u.5
for
4349282

.
zma-u.5
for
103639105

.
zma-u.5
for
118473395

.
zma-u.5
for
100286194

.


Ortholog ID: 5835
Species ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna sbi sbi sot bdi bdi nta nta
Symbol AT5G03450 LOC100817687 LOC100818898 LOC101258298 LOC4349282 LOC9271783 LOC103639105 LOC100194370 LOC103850497 LOC100241876 LOC109123052 LOC7463458 LOC18100140 LOC11421492 LOC123181576 LOC123102492 LOC123437850 LOC123450061 LOC107959913 LOC107907698 LOC106424062 LOC8059510 LOC8058785 LOC102580985 LOC100841855 LOC100830699 LOC107827739 LOC107791476
Function* Transducin/WD40 repeat-like superfamily protein E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC101258298 uncharacterized LOC4349282 uncharacterized LOC9271783 uncharacterized LOC103639105 putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC100241876 uncharacterized LOC109123052 uncharacterized LOC7463458 uncharacterized LOC18100140 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC123102492 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3-like E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC107827739 uncharacterized LOC107791476
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03430 Mismatch repair 4
mtr03420 Nucleotide excision repair 3
mtr03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831835 100817687 100818898 101258298 4349282 9271783 103639105 100194370 103850497 100241876 109123052 7463458 18100140 11421492 123181576 123102492 123437850 123450061 107959913 107907698 106424062 8059510 8058785 102580985 100841855 100830699 107827739 107791476
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