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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   109123052   uncharacterized LOC109123052 
 vvi-r.5   109123052   uncharacterized LOC109123052 
 vvi-u.5   100241876   uncharacterized LOC100241876 
 ath-u.5   AT5G03450   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100818898   E3 ubiquitin-protein ligase RFWD3 
 gma-u.5   100817687   E3 ubiquitin-protein ligase RFWD3 
 bra-r.6   103850497   E3 ubiquitin-protein ligase RFWD3 
 ppo-u.5   18100140   uncharacterized LOC18100140 
 ppo-u.5   7463458   uncharacterized LOC7463458 
 mtr-u.5   11421492   E3 ubiquitin-protein ligase RFWD3 
 ghi-r.1   107959913   E3 ubiquitin-protein ligase RFWD3 
 ghi-r.1   107907698   E3 ubiquitin-protein ligase RFWD3 
 bna-r.1   106424062   E3 ubiquitin-protein ligase RFWD3 
 sly-u.5   101258298   uncharacterized LOC101258298 
 sot-r.1   102580985   E3 ubiquitin-protein ligase RFWD3 
 nta-r.1   107827739   uncharacterized LOC107827739 
 nta-r.1   107791476   uncharacterized LOC107791476 
 osa-u.5   9271783   uncharacterized LOC9271783 
 osa-u.5   4349282   uncharacterized LOC4349282 
 zma-u.5   118473395   E3 ubiquitin-protein ligase RFWD3-like 
 zma-u.5   100286194   uncharacterized LOC100286194 
 zma-u.5   100194370   putative RING zinc finger domain superfamily protein 
 tae-r.2   123093996   E3 ubiquitin-protein ligase RFWD3 
 tae-r.2   123099196   E3 ubiquitin-protein ligase RFWD3 
 tae-r.2   123051464   E3 ubiquitin-protein ligase RFWD3 
 hvu-r.1   123437850   E3 ubiquitin-protein ligase RFWD3 
 hvu-r.1   123450061   E3 ubiquitin-protein ligase RFWD3-like 
 sbi-r.1   8059510   E3 ubiquitin-protein ligase RFWD3 
 sbi-r.1   8058785   E3 ubiquitin-protein ligase RFWD3 
 bdi-r.1   100841855   E3 ubiquitin-protein ligase RFWD3 
 bdi-r.1   100830699   E3 ubiquitin-protein ligase RFWD3 

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Top 50 coexpressed genes to 109123052 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 109123052 (vvi-u.5 coexpression data)

CoexMap"109123052"


vviLOC109123052 | Entrez gene ID : 109123052    
Species vvi ath gma bra ppo mtr ghi bna sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 3 1 2 1 2 1 2 1 1 1 2 2 3 3 2 2 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0036297 [list] [network] interstrand cross-link repair  (14 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (272 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (166 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_059595201.1 [sequence] [blastp]
XP_059595202.1 [sequence] [blastp]
XP_059595203.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_059595201.1)
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_059595202.1)
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_059595203.1)
Subcellular
localization
TargetP
other 8  (predict for XP_059595201.1)
other 8  (predict for XP_059595202.1)
other 8  (predict for XP_059595203.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
109123052
vvi-r.5
for
109123052
vvi-u.5
for
100241876
ath-u.5
for
AT5G03450
gma-u.5
for
100818898
gma-u.5
for
100817687
bra-r.6
for
103850497
ppo-u.5
for
18100140
ppo-u.5
for
7463458
mtr-u.5
for
11421492
ghi-r.1
for
107959913
ghi-r.1
for
107907698
bna-r.1
for
106424062
sly-u.5
for
101258298
sot-r.1
for
102580985
nta-r.1
for
107827739
nta-r.1
for
107791476
osa-u.5
for
9271783
osa-u.5
for
4349282
zma-u.5
for
118473395
zma-u.5
for
100286194
zma-u.5
for
100194370
tae-r.2
for
123093996
tae-r.2
for
123099196
tae-r.2
for
123051464
hvu-r.1
for
123437850
hvu-r.1
for
123450061
sbi-r.1
for
8059510
sbi-r.1
for
8058785
bdi-r.1
for
100841855
bdi-r.1
for
100830699


Ortholog ID: 5835
Species vvi vvi ath gma gma bra ppo ppo mtr ghi ghi bna sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC109123052 LOC100241876 AT5G03450 LOC100818898 LOC100817687 LOC103850497 LOC18100140 LOC7463458 LOC11421492 LOC107959913 LOC107907698 LOC106424062 LOC101258298 LOC102580985 LOC107827739 LOC107791476 LOC9271783 LOC4349282 LOC118473395 LOC100194370 LOC103639105 LOC123099196 LOC123102492 LOC123181576 LOC123437850 LOC123450061 LOC8059510 LOC8058785 LOC100841855 LOC100830699
Function* uncharacterized LOC109123052 uncharacterized LOC100241876 Transducin/WD40 repeat-like superfamily protein E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC18100140 uncharacterized LOC7463458 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC101258298 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC107827739 uncharacterized LOC107791476 uncharacterized LOC9271783 uncharacterized LOC4349282 E3 ubiquitin-protein ligase RFWD3-like putative RING zinc finger domain superfamily protein uncharacterized LOC103639105 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC123102492 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3-like E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03430 Mismatch repair 4
mtr03420 Nucleotide excision repair 3
mtr03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 109123052 100241876 831835 100818898 100817687 103850497 18100140 7463458 11421492 107959913 107907698 106424062 101258298 102580985 107827739 107791476 9271783 4349282 118473395 100194370 103639105 123099196 123102492 123181576 123437850 123450061 8059510 8058785 100841855 100830699
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