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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8059510   E3 ubiquitin-protein ligase RFWD3 
 sbi-r.1   8058785   E3 ubiquitin-protein ligase RFWD3 
 zma-u.5   103639105   uncharacterized LOC103639105 
 zma-u.5   118473395   E3 ubiquitin-protein ligase RFWD3-like 
 zma-u.5   100286194   uncharacterized LOC100286194 
 osa-u.5   9271783   uncharacterized LOC9271783 
 osa-u.5   4349282   uncharacterized LOC4349282 
 tae-r.2   123181576   E3 ubiquitin-protein ligase RFWD3 
 tae-r.2   123051464   E3 ubiquitin-protein ligase RFWD3 
 tae-r.2   123093996   E3 ubiquitin-protein ligase RFWD3 
 hvu-r.1   123437850   E3 ubiquitin-protein ligase RFWD3 
 hvu-r.1   123450061   E3 ubiquitin-protein ligase RFWD3-like 
 bdi-r.1   100841855   E3 ubiquitin-protein ligase RFWD3 
 bdi-r.1   100830699   E3 ubiquitin-protein ligase RFWD3 
 ath-u.5   AT5G03450   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100817687   E3 ubiquitin-protein ligase RFWD3 
 gma-u.5   100818898   E3 ubiquitin-protein ligase RFWD3 
 sly-u.5   101258298   uncharacterized LOC101258298 
 bra-r.6   103850497   E3 ubiquitin-protein ligase RFWD3 
 vvi-u.5   100241876   uncharacterized LOC100241876 
 vvi-u.5   109123052   uncharacterized LOC109123052 
 ppo-u.5   7463458   uncharacterized LOC7463458 
 ppo-u.5   18100140   uncharacterized LOC18100140 
 mtr-u.5   11421492   E3 ubiquitin-protein ligase RFWD3 
 ghi-r.1   107959913   E3 ubiquitin-protein ligase RFWD3 
 ghi-r.1   107907698   E3 ubiquitin-protein ligase RFWD3 
 bna-r.1   106424062   E3 ubiquitin-protein ligase RFWD3 
 sot-r.1   102580985   E3 ubiquitin-protein ligase RFWD3 
 nta-r.1   107791476   uncharacterized LOC107791476 
 nta-r.1   107827739   uncharacterized LOC107827739 

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Top 50 coexpressed genes to 8059510 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8059510 (sbi-r.1 coexpression data)

CoexMap"8059510"


sbiLOC8059510 | Entrez gene ID : 8059510      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot nta cit cre
Paralog 2 3 2 3 2 2 1 2 1 1 2 2 1 2 1 1 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0036297 [list] [network] interstrand cross-link repair  (15 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (412 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002468674.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  mito 1,  cysk 1  (predict for XP_002468674.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002468674.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8059510
sbi-r.1
for
8058785
zma-u.5
for
103639105
zma-u.5
for
118473395
zma-u.5
for
100286194
osa-u.5
for
9271783
osa-u.5
for
4349282
tae-r.2
for
123181576
tae-r.2
for
123051464
tae-r.2
for
123093996
hvu-r.1
for
123437850
hvu-r.1
for
123450061
bdi-r.1
for
100841855
bdi-r.1
for
100830699
ath-u.5
for
AT5G03450
gma-u.5
for
100817687
gma-u.5
for
100818898
sly-u.5
for
101258298
bra-r.6
for
103850497
vvi-u.5
for
100241876
vvi-u.5
for
109123052
ppo-u.5
for
7463458
ppo-u.5
for
18100140
mtr-u.5
for
11421492
ghi-r.1
for
107959913
ghi-r.1
for
107907698
bna-r.1
for
106424062
sot-r.1
for
102580985
nta-r.1
for
107791476
nta-r.1
for
107827739


Ortholog ID: 5835
Species sbi sbi zma zma zma osa osa tae tae tae hvu hvu bdi bdi ath gma gma sly bra vvi vvi ppo ppo mtr ghi ghi bna sot nta nta
Symbol LOC8059510 LOC8058785 LOC103639105 LOC118473395 LOC100194370 LOC9271783 LOC4349282 LOC123181576 LOC123099196 LOC123102492 LOC123437850 LOC123450061 LOC100841855 LOC100830699 AT5G03450 LOC100817687 LOC100818898 LOC101258298 LOC103850497 LOC100241876 LOC109123052 LOC7463458 LOC18100140 LOC11421492 LOC107959913 LOC107907698 LOC106424062 LOC102580985 LOC107791476 LOC107827739
Function* E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC103639105 E3 ubiquitin-protein ligase RFWD3-like putative RING zinc finger domain superfamily protein uncharacterized LOC9271783 uncharacterized LOC4349282 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC123102492 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3-like E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 Transducin/WD40 repeat-like superfamily protein E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC101258298 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC100241876 uncharacterized LOC109123052 uncharacterized LOC7463458 uncharacterized LOC18100140 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 E3 ubiquitin-protein ligase RFWD3 uncharacterized LOC107791476 uncharacterized LOC107827739
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03430 Mismatch repair 4
mtr03420 Nucleotide excision repair 3
mtr03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8059510 8058785 103639105 118473395 100194370 9271783 4349282 123181576 123099196 123102492 123437850 123450061 100841855 100830699 831835 100817687 100818898 101258298 103850497 100241876 109123052 7463458 18100140 11421492 107959913 107907698 106424062 102580985 107791476 107827739
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