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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102586522   pentatricopeptide repeat-containing protein At5g18475 
 sly-u.5   101249352   pentatricopeptide repeat-containing protein At5g18475 
 ath-u.5   AT5G18475   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100790966   pentatricopeptide repeat-containing protein At5g18475 
 vvi-u.5   100243762   pentatricopeptide repeat-containing protein At5g18475 
 ppo-u.5   7461811   pentatricopeptide repeat-containing protein At5g18475 
 osa-u.5   4329334   pentatricopeptide repeat-containing protein At5g18475 

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Top 50 coexpressed genes to 102586522 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102586522 (sot-r.1 coexpression data)

CoexMap"102586522"


sotLOC102586522 | Entrez gene ID : 102586522    
Species sot sly ath gma vvi ppo osa sbi nta mtr cre bra cit hvu bdi zma tae bna ghi
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (296 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006338085.1 [sequence] [blastp]
XP_015167983.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 3,  chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2,  cyto_mito 2  (predict for XP_006338085.1)
mito 3,  chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2,  cyto_mito 2  (predict for XP_015167983.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_006338085.1)
chlo 2  (predict for XP_015167983.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102586522

.
sly-u.5
for
101249352

.
ath-u.5
for
AT5G18475

.
gma-u.5
for
100790966

.
vvi-u.5
for
100243762

.
ppo-u.5
for
7461811

.
osa-u.5
for
4329334

.


Ortholog ID: 11821
Species ath gma sly osa bra vvi ppo tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G18475 LOC100790966 LOC101249352 LOC4329334 LOC103851174 LOC100243762 LOC7461811 LOC123167238 LOC123153169 LOC123410577 LOC107953223 LOC107954347 LOC111202821 LOC106431478 LOC8080040 LOC102586522 LOC102629363 LOC100846280 LOC107818344 LOC107776748
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475-like pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475-like pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 uncharacterized LOC107818344 uncharacterized LOC107776748
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00340 Histidine metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00020 Citrate cycle (TCA cycle) 2
cit01200 Carbon metabolism 2
cit01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta03410 Base excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 2745987 100790966 101249352 4329334 103851174 100243762 7461811 123167238 123153169 123410577 107953223 107954347 111202821 106431478 8080040 102586522 102629363 100846280 107818344 107776748
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