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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123167238   pentatricopeptide repeat-containing protein At5g18475 
 osa-u.5   4329334   pentatricopeptide repeat-containing protein At5g18475 
 ath-u.5   AT5G18475   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100790966   pentatricopeptide repeat-containing protein At5g18475 
 sly-u.5   101249352   pentatricopeptide repeat-containing protein At5g18475 
 vvi-u.5   100243762   pentatricopeptide repeat-containing protein At5g18475 
 ppo-u.5   7461811   pentatricopeptide repeat-containing protein At5g18475 

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Top 50 coexpressed genes to 123167238 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123167238 (tae-r.2 coexpression data)

CoexMap"123167238"


taeLOC123167238 | Entrez gene ID : 123167238    
Species tae osa ath gma sly vvi ppo bdi mtr bra hvu cit bna sbi ghi sot nta cre zma
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007005 [list] [network] mitochondrion organization  (254 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (1836 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1872 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044441004.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_044441004.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_044441004.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123167238
osa-u.5
for
4329334
ath-u.5
for
AT5G18475
gma-u.5
for
100790966
sly-u.5
for
101249352
vvi-u.5
for
100243762
ppo-u.5
for
7461811


Ortholog ID: 11821
Species tae tae hvu bdi osa sbi ath gma sly bra vvi ppo ghi ghi bna bna sot cit nta nta
Symbol LOC123167238 LOC123153169 LOC123410577 LOC100846280 LOC4329334 LOC8080040 AT5G18475 LOC100790966 LOC101249352 LOC103851174 LOC100243762 LOC7461811 LOC107953223 LOC107954347 LOC111202821 LOC106431478 LOC102586522 LOC102629363 LOC107818344 LOC107776748
Function* pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475-like pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475-like pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 pentatricopeptide repeat-containing protein At5g18475 uncharacterized LOC107818344 uncharacterized LOC107776748
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00340 Histidine metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00020 Citrate cycle (TCA cycle) 2
cit01200 Carbon metabolism 2
cit01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta03410 Base excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123167238 123153169 123410577 100846280 4329334 8080040 2745987 100790966 101249352 103851174 100243762 7461811 107953223 107954347 111202821 106431478 102586522 102629363 107818344 107776748
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