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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102586548   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 sly-u.5   101246042   pentatricopeptide repeat-containing protein 
 ath-u.5   AT3G04760   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100812545   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 gma-u.5   100806999   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 gma-u.5   100798097   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 vvi-u.5   100255274   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 ppo-u.5   18108177   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 ppo-u.5   18104091   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 mtr-u.5   11413581   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 

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Top 50 coexpressed genes to 102586548 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102586548 (sot-r.1 coexpression data)

CoexMap"102586548"


sotLOC102586548 | Entrez gene ID : 102586548    
Species sot sly ath gma vvi ppo mtr sbi nta bra osa cre cit hvu bdi zma tae bna ghi
Paralog 1 1 1 3 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007005 [list] [network] mitochondrion organization  (86 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (579 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (603 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (296 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006361415.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_006361415.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_006361415.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102586548

.
sly-u.5
for
101246042

.
ath-u.5
for
AT3G04760

.
gma-u.5
for
100812545

.
gma-u.5
for
100806999

.
gma-u.5
for
100798097

.
vvi-u.5
for
100255274

.
ppo-u.5
for
18108177

.
ppo-u.5
for
18104091

.
mtr-u.5
for
11413581

.


Ortholog ID: 12650
Species ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta
Symbol AT3G04760 LOC100812545 LOC100806999 LOC101246042 LOC103849142 LOC100255274 LOC18108177 LOC18104091 LOC11413581 LOC107926841 LOC107892830 LOC106427413 LOC106453085 LOC102586548 LOC102607585 LOC107809623 LOC107822701
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like uncharacterized LOC107809623 uncharacterized LOC107822701
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma00053 Ascorbate and aldarate metabolism 2
gma00480 Glutathione metabolism 2
gma00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 11
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819636 100812545 100806999 101246042 103849142 100255274 18108177 18104091 11413581 107926841 107892830 106427413 106453085 102586548 102607585 107809623 107822701
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