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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102589457   putative pentatricopeptide repeat-containing protein At5g40405 
 sly-u.5   101259694   putative pentatricopeptide repeat-containing protein At5g40405 
 nta-r.1   107788068   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 nta-r.1   107800899   putative pentatricopeptide repeat-containing protein At5g40405 
 vvi-u.5   100243474   pentatricopeptide repeat-containing protein At4g21065 
 ghi-r.1   107891294   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 ghi-r.1   121220898   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 osa-u.5   4327598   putative pentatricopeptide repeat-containing protein At5g40405 
 zma-u.5   100382299   Pentatricopeptide repeat-containing protein chloroplastic/mitochondrial 
 tae-r.2   123079535   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 hvu-r.1   123444682   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 sbi-r.1   8085381   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 bdi-r.1   100830300   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 

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Top 50 coexpressed genes to 102589457 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102589457 (sot-r.1 coexpression data)

CoexMap"102589457"


sotLOC102589457 | Entrez gene ID : 102589457      
Species sot sly nta vvi ghi osa zma tae hvu sbi bdi bna ppo cre mtr ath gma bra cit
Paralog 1 1 2 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (768 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006351408.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cysk 4,  chlo 1,  plas 1  (predict for XP_006351408.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006351408.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102589457
sly-u.5
for
101259694
nta-r.1
for
107788068
nta-r.1
for
107800899
vvi-u.5
for
100243474
ghi-r.1
for
107891294
ghi-r.1
for
121220898
osa-u.5
for
4327598
zma-u.5
for
100382299
tae-r.2
for
123079535
hvu-r.1
for
123444682
sbi-r.1
for
8085381
bdi-r.1
for
100830300


Ortholog ID: 13524
Species sot sly nta nta vvi ghi ghi osa zma tae hvu sbi bdi
Symbol LOC102589457 LOC101259694 LOC107788068 LOC107800899 LOC100243474 LOC107891294 LOC121220898 LOC4327598 LOC100382299 LOC123079535 LOC123444682 LOC8085381 LOC100830300
Function* putative pentatricopeptide repeat-containing protein At5g40405 putative pentatricopeptide repeat-containing protein At5g40405 pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like putative pentatricopeptide repeat-containing protein At5g40405 pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial putative pentatricopeptide repeat-containing protein At5g40405 Pentatricopeptide repeat-containing protein chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03040 Spliceosome 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102589457 101259694 107788068 107800899 100243474 107891294 121220898 4327598 100382299 123079535 123444682 8085381 100830300
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