ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102589779	ataxin-3 homolog
nta-r.1	107770203	ataxin-3 homolog
nta-r.1	107816411	ataxin-3 homolog
ath-u.5	AT3G54130	Josephin family protein
gma-u.5	100808056	ataxin-3 homolog
gma-u.5	100776098	ataxin-3 homolog
bra-r.6	103863262	ataxin-3 homolog
bra-r.6	103841330	ataxin-3 homolog
vvi-u.5	100249311	ataxin-3 homolog
ppo-u.5	7466041	ataxin-3 homolog
ppo-u.5	7468037	ataxin-3 homolog
mtr-u.5	11428042	ataxin-3 homolog
ghi-r.1	107898125	ataxin-3 homolog
ghi-r.1	107905647	ataxin-3 homolog
ghi-r.1	107958033	ataxin-3 homolog
bna-r.1	106411666	ataxin-3 homolog
bna-r.1	106411806	ataxin-3 homolog
bna-r.1	106421517	ataxin-3 homolog
cit-r.1	102608142	ataxin-3 homolog
osa-u.5	4324808	putative ataxin-3 homolog
zma-u.5	100283523	uncharacterized LOC100283523
zma-u.5	100273270	Ataxin-3-like protein
tae-r.2	123135528	ataxin-3 homolog
tae-r.2	123079771	putative ataxin-3 homolog
hvu-r.1	123444880	putative ataxin-3 homolog
hvu-r.1	123445759	ataxin-3 homolog
sbi-r.1	8058916	putative ataxin-3 homolog
bdi-r.1	100827657	putative ataxin-3 homolog
cre-r.1	CHLRE_11g475450v5	uncharacterized protein

Annotation

functional annotation

KEGG

sot04141 [list] [network] Protein processing in endoplasmic reticulum (261 genes)

GO BP

GO:0016579 [list] [network] protein deubiquitination

(70 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2556 genes)

IEA

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity

(58 genes)

IEA

Protein

XP_006349474.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, extr 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_006349474.1)

Subcellular
localization
TargetP

other 7

(predict for XP_006349474.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102589779	nta-r.1 for 107770203	nta-r.1 for 107816411	ath-u.5 for AT3G54130	gma-u.5 for 100808056	gma-u.5 for 100776098	bra-r.6 for 103863262	bra-r.6 for 103841330	vvi-u.5 for 100249311	ppo-u.5 for 7466041	ppo-u.5 for 7468037	mtr-u.5 for 11428042	ghi-r.1 for 107898125	ghi-r.1 for 107905647	ghi-r.1 for 107958033	bna-r.1 for 106411666	bna-r.1 for 106411806	bna-r.1 for 106421517	cit-r.1 for 102608142	osa-u.5 for 4324808	zma-u.5 for 100283523	zma-u.5 for 100273270	tae-r.2 for 123135528	tae-r.2 for 123079771	hvu-r.1 for 123444880	hvu-r.1 for 123445759	sbi-r.1 for 8058916	bdi-r.1 for 100827657	cre-r.1 for CHLRE_11g475450v5

Ortholog

Ortholog ID: 6289

Species

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ataxin-3 homolog

Josephin family protein

ataxin-3 homolog

putative ataxin-3 homolog

uncharacterized LOC100283523

Ataxin-3-like protein

ataxin-3 homolog

putative ataxin-3 homolog

ataxin-3 homolog

putative ataxin-3 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot00020	Citrate cycle (TCA cycle)	3
sot01200	Carbon metabolism	3
sot01210	2-Oxocarboxylic acid metabolism	3
sot01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta00040	Pentose and glucuronate interconversions	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta03013	Nucleocytoplasmic transport	4
nta00040	Pentose and glucuronate interconversions	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03013	Nucleocytoplasmic transport	3
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	5
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00620	Pyruvate metabolism	4
ghi01200	Carbon metabolism	4
ghi01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5
bna02010	ABC transporters	2
bna04981	Folate transport and metabolism	2
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5
bna02010	ABC transporters	2
bna04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3
bna02010	ABC transporters	2
bna04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03018	RNA degradation	3
tae04820	Cytoskeleton in muscle cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15
tae03082	ATP-dependent chromatin remodeling	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	5
tae04141	Protein processing in endoplasmic reticulum	4
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu04141	Protein processing in endoplasmic reticulum	2
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	11
bdi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

102589779

107770203

107816411

824580

100808056

100776098

103863262

103841330

100249311

7466041

7468037

11428042

107898125

107905647

107958033

106411666

106411806

106421517

102608142

4324808

100283523

100273270

123135528

123079771

123062615

123444880

123445759

8058916

100827657

5727563

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102589779 (sot-r.1 coexpression data)

Top 50 enrichment test to 102589779 (sot-r.1 coexpression data)


Species	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre	sly
Paralog	1	2	1	2	2	1	2	1	3	3	1	1	2	2	2	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102589779 (sot-r.1 coexpression data)

Top 50 enrichment test to 102589779 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**