ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101256221	uncharacterized LOC101256221
nta-r.1	107799124	uncharacterized LOC107799124
nta-r.1	107797633	uncharacterized LOC107797633
ath-u.5	AT3G42860	zinc knuckle (CCHC-type) family protein
ath-u.5	AT5G13920	GRF zinc finger / Zinc knuckle protein
gma-u.5	100804614	uncharacterized LOC100804614
gma-u.5	100802558	uncharacterized LOC100802558
gma-u.5	100527087	putative GRF zinc finger protein
bra-r.6	103838711	uncharacterized LOC103838711
bra-r.6	103856039	uncharacterized LOC103856039
bra-r.6	103845042	DNA-binding protein HEXBP
vvi-u.5	100245024	cold shock protein 1
ppo-u.5	18109015	uncharacterized LOC18109015
ppo-u.5	18102133	uncharacterized LOC18102133
ppo-u.5	18095236	cold shock domain-containing protein 3
mtr-u.5	112416361	uncharacterized LOC112416361
mtr-u.5	112416309	uncharacterized LOC112416309
ghi-r.1	107962951	DNA-binding protein HEXBP
ghi-r.1	107901775	DNA-binding protein HEXBP-like
bna-r.1	111214308	uncharacterized LOC111214308
bna-r.1	BNAA09G15590D	uncharacterized BNAA09G15590D
cit-r.1	102607900	uncharacterized LOC102607900
cit-r.1	127900460	uncharacterized LOC127900460
osa-u.5	4334351	uncharacterized LOC4334351
zma-u.5	103644140	DNA-binding protein HEXBP
tae-r.2	123123110	DNA-binding protein HEXBP
tae-r.2	123113583	DNA-binding protein HEXBP
tae-r.2	123105321	DNA-binding protein HEXBP
hvu-r.1	123452584	DNA-binding protein HEXBP-like
sbi-r.1	8083913	cold shock domain-containing protein 3
bdi-r.1	100838417	DNA-binding protein HEXBP

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding	(768 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3830 genes)	IEA

Protein

XP_006347729.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_006347729.1)

Subcellular
localization
TargetP

other 6

(predict for XP_006347729.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101256221	nta-r.1 for 107799124	nta-r.1 for 107797633	ath-u.5 for AT3G42860	ath-u.5 for AT5G13920	gma-u.5 for 100804614	gma-u.5 for 100802558	gma-u.5 for 100527087	bra-r.6 for 103838711	bra-r.6 for 103856039	bra-r.6 for 103845042	vvi-u.5 for 100245024	ppo-u.5 for 18109015	ppo-u.5 for 18102133	ppo-u.5 for 18095236	mtr-u.5 for 112416361	mtr-u.5 for 112416309	ghi-r.1 for 107962951	ghi-r.1 for 107901775	bna-r.1 for 111214308	bna-r.1 for BNAA09G15590D	cit-r.1 for 102607900	cit-r.1 for 127900460	osa-u.5 for 4334351	zma-u.5 for 103644140	tae-r.2 for 123123110	tae-r.2 for 123113583	tae-r.2 for 123105321	hvu-r.1 for 123452584	sbi-r.1 for 8083913	bdi-r.1 for 100838417

Ortholog

Ortholog ID: 4923

Species

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC101256221

uncharacterized LOC107799124

uncharacterized LOC107797633

zinc knuckle (CCHC-type) family protein

GRF zinc finger / Zinc knuckle protein

uncharacterized LOC100804614

uncharacterized LOC100802558

putative GRF zinc finger protein

uncharacterized LOC103838711

uncharacterized LOC103856039

DNA-binding protein HEXBP

cold shock protein 1

uncharacterized LOC18109015

uncharacterized LOC18102133

cold shock domain-containing protein 3

uncharacterized LOC112416361

uncharacterized LOC112416309

DNA-binding protein HEXBP

DNA-binding protein HEXBP-like

uncharacterized LOC106386738

cold shock protein 1

uncharacterized LOC102607900

uncharacterized LOC127900460

uncharacterized LOC4334351

DNA-binding protein HEXBP

DNA-binding protein HEXBP-like

cold shock domain-containing protein 3

DNA-binding protein HEXBP

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	2
sly03440	Homologous recombination	2
sly03460	Fanconi anemia pathway	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	5
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	3
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma04075	Plant hormone signal transduction	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

101256221

107799124

107797633

823332

831239

100804614

100802558

100527087

103838711

103856039

103845042

100245024

18109015

18102133

18095236

112416361

112416309

107962951

107901775

106386738

106380438

106371363

102607900

127900460

4334351

103644140

123123110

123113583

123105321

123452584

8083913

100838417

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101256221 (sly-u.5 coexpression data)

Top 50 enrichment test to 101256221 (sly-u.5 coexpression data)


Species	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	sot	cre
Paralog	1	2	2	3	3	1	3	2	2	2	2	1	1	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101256221 (sly-u.5 coexpression data)

Top 50 enrichment test to 101256221 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**