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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102610953   scarecrow-like protein 6 
 cit-r.1   102611258   scarecrow-like protein 27 
 cit-r.1   102613743   scarecrow-like protein 6 
 ath-u.5   HAM1   GRAS family transcription factor 
 ath-u.5   HAM2   GRAS family transcription factor 
 ath-u.5   HAM3   GRAS family transcription factor 
 bra-r.6   103858159   scarecrow-like protein 27 
 bra-r.6   103830132   scarecrow-like protein 27 
 bra-r.6   103836942   scarecrow-like protein 6 
 ghi-r.1   107931299   GRAS family protein RAM1 
 ghi-r.1   107926170   scarecrow-like protein 6 
 ghi-r.1   107931739   scarecrow-like protein 27 
 bna-r.1   125577634   scarecrow-like protein 6 
 bna-r.1   106353214   scarecrow-like protein 27 
 bna-r.1   106388222   scarecrow-like protein 27 
 gma-u.5   100792973   scarecrow-like protein 27 
 gma-u.5   100801785   scarecrow-like protein 6 
 gma-u.5   100805945   scarecrow-like protein 6 
 vvi-u.5   100267664   scarecrow-like protein 27 
 vvi-u.5   100252271   scarecrow-like protein 22 
 ppo-u.5   7461703   scarecrow-like protein 6 
 ppo-u.5   7465515   scarecrow-like protein 27 
 ppo-u.5   7480613   scarecrow-like protein 6 
 mtr-u.5   120575826   scarecrow-like protein 6 
 mtr-u.5   25480239   scarecrow-like protein 6 
 mtr-u.5   25491659   scarecrow-like protein 6 
 sly-u.5   GRAS24   GRAS family protein 
 sly-u.5   HAM   GRAS transcriptional regulator HAM 
 sot-r.1   102602862   scarecrow-like protein 22 
 sot-r.1   102606202   scarecrow-like protein 22 
 nta-r.1   107807450   scarecrow-like protein 6 
 nta-r.1   107807449   scarecrow-like protein 22 
 nta-r.1   107802311   scarecrow-like protein 22 
 osa-u.5   107275984   scarecrow-like protein 6 
 osa-u.5   4331304   scarecrow-like protein 27 
 zma-u.5   103630535   scarecrow-like protein 6 
 zma-u.5   100272800   scarecrow-like 6 
 zma-u.5   100274201   Scarecrow-like protein 6 
 tae-r.2   123127929   scarecrow-like protein 6 
 tae-r.2   123051684   scarecrow-like protein 6 
 tae-r.2   123088563   scarecrow-like protein 22 
 hvu-r.1   123406350   scarecrow-like protein 6 
 hvu-r.1   123438320   scarecrow-like protein 6 
 hvu-r.1   123449969   scarecrow-like protein 6 
 sbi-r.1   110430902   scarecrow-like protein 6 
 sbi-r.1   8055973   scarecrow-like protein 6 
 sbi-r.1   8058755   scarecrow-like protein 6 
 bdi-r.1   100828697   scarecrow-like protein 27 
 bdi-r.1   100841394   scarecrow-like protein 22 
 bdi-r.1   100834684   scarecrow-like protein 6 

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Top 50 coexpressed genes to 102610953 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102610953 (cit-r.1 coexpression data)

CoexMap"102610953"


citLOC102610953 | Entrez gene ID : 102610953      
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 3 3 3 3 2 3 3 2 2 3 2 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1325 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2569 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (530 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (825 genes)  IEA  
Protein XP_006490864.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  vacu 1,  cysk 1  (predict for XP_006490864.2)
Subcellular
localization
TargetP
other 8  (predict for XP_006490864.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102610953
cit-r.1
for
102611258
cit-r.1
for
102613743
ath-u.5
for
HAM1
ath-u.5
for
HAM2
ath-u.5
for
HAM3
bra-r.6
for
103858159
bra-r.6
for
103830132
bra-r.6
for
103836942
ghi-r.1
for
107931299
ghi-r.1
for
107926170
ghi-r.1
for
107931739
bna-r.1
for
125577634
bna-r.1
for
106353214
bna-r.1
for
106388222
gma-u.5
for
100792973
gma-u.5
for
100801785
gma-u.5
for
100805945
vvi-u.5
for
100267664
vvi-u.5
for
100252271
ppo-u.5
for
7461703
ppo-u.5
for
7465515
ppo-u.5
for
7480613
mtr-u.5
for
120575826
mtr-u.5
for
25480239
mtr-u.5
for
25491659
sly-u.5
for
GRAS24
sly-u.5
for
HAM
sot-r.1
for
102602862
sot-r.1
for
102606202
nta-r.1
for
107807450
nta-r.1
for
107807449
nta-r.1
for
107802311
osa-u.5
for
107275984
osa-u.5
for
4331304
zma-u.5
for
103630535
zma-u.5
for
100272800
zma-u.5
for
100274201
tae-r.2
for
123127929
tae-r.2
for
123051684
tae-r.2
for
123088563
hvu-r.1
for
123406350
hvu-r.1
for
123438320
hvu-r.1
for
123449969
sbi-r.1
for
110430902
sbi-r.1
for
8055973
sbi-r.1
for
8058755
bdi-r.1
for
100828697
bdi-r.1
for
100841394
bdi-r.1
for
100834684


Ortholog ID: 1014
Species cit cit cit ath ath ath bra bra bra ghi ghi ghi bna bna bna gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC102610953 LOC102611258 LOC102613743 HAM1 HAM2 HAM3 LOC103830132 LOC103836942 LOC103862870 LOC107945536 LOC107945538 LOC107924044 LOC106353214 LOC106391896 LOC106432091 LOC100792973 LOC100805945 LOC100794596 LOC100267664 LOC100252271 LOC7461703 LOC7465515 LOC7480613 LOC120575826 LOC25480239 LOC25491659 GRAS24 HAM LOC102602862 LOC102606202 LOC107763537 LOC107763536 LOC107810717 LOC107275984 LOC4331304 LOC100274201 LOC100279420 LOC100381701 LOC123181605 LOC123106077 LOC123406350 LOC123449969 LOC123412246 LOC8058755 LOC8059527 LOC8067884 LOC100828697 LOC100841394 LOC100834684
Function* scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6 GRAS family transcription factor GRAS family transcription factor GRAS family transcription factor scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 27 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 GRAS family protein GRAS transcriptional regulator HAM scarecrow-like protein 22 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 27 Scarecrow-like protein 6 uncharacterized LOC100279420 uncharacterized LOC100381701 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 3
ath04075 Plant hormone signal transduction 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00904 Diterpenoid biosynthesis 2
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi03018 RNA degradation 2
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
nta04141 Protein processing in endoplasmic reticulum 4
nta00190 Oxidative phosphorylation 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00750 Vitamin B6 metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma00999 Biosynthesis of various plant secondary metabolites 3
zma02010 ABC transporters 3
zma04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00650 Butanoate metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102610953 102611258 102613743 819124 825234 828208 103830132 103836942 103862870 107945536 107945538 107924044 106353214 106391896 106432091 100792973 100805945 100794596 100267664 100252271 7461703 7465515 7480613 120575826 25480239 25491659 104648977 101252614 102602862 102606202 107763537 107763536 107810717 107275984 4331304 100274201 100279420 100381701 123181605 123106077 123406350 123449969 123412246 8058755 8059527 8067884 100828697 100841394 100834684
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