ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100801785	scarecrow-like protein 6
gma-r.7	100801785	scarecrow-like protein 6
gma-u.5	100792973	scarecrow-like protein 27
gma-u.5	100805945	scarecrow-like protein 6
gma-u.5	100794596	scarecrow-like protein 6
mtr-u.5	25491659	scarecrow-like protein 6
mtr-u.5	120575826	scarecrow-like protein 6
mtr-u.5	25480239	scarecrow-like protein 6
ppo-u.5	18105185	scarecrow-like protein 6
ppo-u.5	7480613	scarecrow-like protein 6
ppo-u.5	7465515	scarecrow-like protein 27
ath-u.5	HAM1	GRAS family transcription factor
ath-u.5	HAM2	GRAS family transcription factor
ath-u.5	HAM3	GRAS family transcription factor
bra-r.6	103830132	scarecrow-like protein 27
bra-r.6	103858159	scarecrow-like protein 27
bra-r.6	103836942	scarecrow-like protein 6
vvi-u.5	100267664	scarecrow-like protein 27
vvi-u.5	100252271	scarecrow-like protein 22
ghi-r.1	121223557	scarecrow-like protein 6
ghi-r.1	107926170	scarecrow-like protein 6
ghi-r.1	107931299	GRAS family protein RAM1
bna-r.1	125577634	scarecrow-like protein 6
bna-r.1	106411510	scarecrow-like protein 22
bna-r.1	106432091	scarecrow-like protein 27
cit-r.1	102610953	scarecrow-like protein 6
cit-r.1	102613743	scarecrow-like protein 6
cit-r.1	102611258	scarecrow-like protein 27
sly-u.5	HAM	GRAS transcriptional regulator HAM
sly-u.5	GRAS24	GRAS family protein
sot-r.1	102602862	scarecrow-like protein 22
sot-r.1	102606202	scarecrow-like protein 22
nta-r.1	107807450	scarecrow-like protein 6
nta-r.1	107807449	scarecrow-like protein 22
nta-r.1	107802311	scarecrow-like protein 22
osa-u.5	4330230	scarecrow-like protein 6
osa-u.5	4330231	scarecrow-like protein 6
osa-u.5	4336617	scarecrow-like protein 27
zma-u.5	100274201	Scarecrow-like protein 6
zma-u.5	100279263	uncharacterized LOC100279263
zma-u.5	100279420	uncharacterized LOC100279420
tae-r.2	123093911	scarecrow-like protein 6
tae-r.2	123127929	scarecrow-like protein 6
tae-r.2	123051684	scarecrow-like protein 6
hvu-r.1	123406350	scarecrow-like protein 6
hvu-r.1	123412246	scarecrow-like protein 22
hvu-r.1	123438320	scarecrow-like protein 6
sbi-r.1	8055973	scarecrow-like protein 6
sbi-r.1	110430902	scarecrow-like protein 6
sbi-r.1	8076216	scarecrow-like protein 27
bdi-r.1	100841394	scarecrow-like protein 22
bdi-r.1	100828697	scarecrow-like protein 27
bdi-r.1	100822245	scarecrow-like protein 6

Top 50 coexpressed genes to 100801785 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100801785 (gma-u.5 coexpression data)

CoexMap"100801785"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(3122 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(1503 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(2313 genes)	IEA

Protein

XP_003516440.1 [sequence] [blastp]
XP_040868028.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_003516440.1)
nucl 9	(predict for XP_040868028.1)

Subcellular
localization
TargetP

other 7	(predict for XP_003516440.1)
other 7	(predict for XP_040868028.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100801785	gma-r.7 for 100801785	gma-u.5 for 100792973	gma-u.5 for 100805945	gma-u.5 for 100794596	mtr-u.5 for 25491659	mtr-u.5 for 120575826	mtr-u.5 for 25480239	ppo-u.5 for 18105185	ppo-u.5 for 7480613	ppo-u.5 for 7465515	ath-u.5 for HAM1	ath-u.5 for HAM2	ath-u.5 for HAM3	bra-r.6 for 103830132	bra-r.6 for 103858159	bra-r.6 for 103836942	vvi-u.5 for 100267664	vvi-u.5 for 100252271	ghi-r.1 for 121223557	ghi-r.1 for 107926170	ghi-r.1 for 107931299	bna-r.1 for 125577634	bna-r.1 for 106411510	bna-r.1 for 106432091	cit-r.1 for 102610953	cit-r.1 for 102613743	cit-r.1 for 102611258	sly-u.5 for HAM	sly-u.5 for GRAS24	sot-r.1 for 102602862	sot-r.1 for 102606202	nta-r.1 for 107807450	nta-r.1 for 107807449	nta-r.1 for 107802311	osa-u.5 for 4330230	osa-u.5 for 4330231	osa-u.5 for 4336617	zma-u.5 for 100274201	zma-u.5 for 100279263	zma-u.5 for 100279420	tae-r.2 for 123093911	tae-r.2 for 123127929	tae-r.2 for 123051684	hvu-r.1 for 123406350	hvu-r.1 for 123412246	hvu-r.1 for 123438320	sbi-r.1 for 8055973	sbi-r.1 for 110430902	sbi-r.1 for 8076216	bdi-r.1 for 100841394	bdi-r.1 for 100828697	bdi-r.1 for 100822245

Ortholog

Ortholog ID: 1014

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

HAM1

HAM2

HAM3

HAM

GRAS24

Function^*

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 27

scarecrow-like protein 6

GRAS family transcription factor

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 27

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 27

GRAS transcriptional regulator HAM

GRAS family protein

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

Scarecrow-like protein 6

uncharacterized LOC100279420

uncharacterized LOC100381701

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	2
gma00790	Folate biosynthesis	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00904	Diterpenoid biosynthesis	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi03018	RNA degradation	2
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	4
nta04120	Ubiquitin mediated proteolysis	4
nta04141	Protein processing in endoplasmic reticulum	4
nta00190	Oxidative phosphorylation	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00750	Vitamin B6 metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	3
zma00999	Biosynthesis of various plant secondary metabolites	3
zma02010	ABC transporters	3
zma04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00650	Butanoate metabolism	2
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100792973

100805945

100794596

25491659

120575826

25480239

7480613

7465515

7461703

819124

825234

828208

103830132

103836942

103862870

100267664

100252271

107945536

107945538

107924044

106432091

106391896

106353214

102610953

102613743

102611258

101252614

104648977

102602862

102606202

107763537

107763536

107810717

4331304

107275984

100274201

100279420

100381701

123106077

123181605

123406350

123412246

123449969

8067884

8059527

8058755

100841394

100828697

100834684

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	2	3	3	3	2	2	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100801785 (gma-u.5 coexpression data)

Top 50 enrichment test to 100801785 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**