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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100792973   scarecrow-like protein 27 
 gma-r.7   100792973   scarecrow-like protein 27 
 gma-m.5   100792973   scarecrow-like protein 27 
 gma-u.5   100794596   scarecrow-like protein 6 
 gma-u.5   100805945   scarecrow-like protein 6 
 gma-u.5   100801785   scarecrow-like protein 6 
 mtr-u.5   25491659   scarecrow-like protein 6 
 mtr-u.5   120575826   scarecrow-like protein 6 
 mtr-u.5   25480239   scarecrow-like protein 6 
 ppo-u.5   18105185   scarecrow-like protein 6 
 ppo-u.5   7480613   scarecrow-like protein 6 
 ppo-u.5   7465515   scarecrow-like protein 27 
 ath-u.5   HAM1   GRAS family transcription factor 
 ath-u.5   HAM2   GRAS family transcription factor 
 ath-u.5   HAM3   GRAS family transcription factor 
 vvi-u.5   100267664   scarecrow-like protein 27 
 vvi-u.5   100252271   scarecrow-like protein 22 
 sly-u.5   HAM   GRAS transcriptional regulator HAM 
 sly-u.5   GRAS24   GRAS family protein 
 osa-u.5   4330230   scarecrow-like protein 6 
 osa-u.5   4330231   scarecrow-like protein 6 
 osa-u.5   4336617   scarecrow-like protein 27 
 zma-u.5   100274201   Scarecrow-like protein 6 
 zma-u.5   100279263   uncharacterized LOC100279263 
 zma-u.5   100279420   uncharacterized LOC100279420 

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Top 50 coexpressed genes to 100792973 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100792973 (gma-u.5 coexpression data)

CoexMap"100792973"


gmaLOC100792973 | Entrez gene ID : 100792973      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1503 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein XP_006573232.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  vacu 1,  cysk 1  (predict for XP_006573232.1)
Subcellular
localization
TargetP
other 3  (predict for XP_006573232.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100792973

.
gma-r.7
for
100792973

.
gma-m.5
for
100792973

.
gma-u.5
for
100794596

.
gma-u.5
for
100805945

.
gma-u.5
for
100801785

.
mtr-u.5
for
25491659

.
mtr-u.5
for
120575826

.
mtr-u.5
for
25480239

.
ppo-u.5
for
18105185

.
ppo-u.5
for
7480613

.
ppo-u.5
for
7465515

.
ath-u.5
for
HAM1

.
ath-u.5
for
HAM2

.
ath-u.5
for
HAM3

.
vvi-u.5
for
100267664

.
vvi-u.5
for
100252271

.
sly-u.5
for
HAM

.
sly-u.5
for
GRAS24

.
osa-u.5
for
4330230

.
osa-u.5
for
4330231

.
osa-u.5
for
4336617

.
zma-u.5
for
100274201

.
zma-u.5
for
100279263

.
zma-u.5
for
100279420

.


Ortholog ID: 1014
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol HAM3 HAM2 LOC100805945 LOC100792973 HAM GRAS24 LOC4331304 LOC100381701 LOC100274201 LOC103836942 LOC103862870 LOC100252271 LOC100267664 LOC7480613 LOC7465515 LOC25480239 LOC120575826 LOC123106077 LOC123181605 LOC123406350 LOC123412246 LOC107945536 LOC107945538 LOC106353214 LOC106391896 LOC8067884 LOC8058755 LOC102602862 LOC102606202 LOC102610953 LOC102611258 LOC100828697 LOC100834684 LOC107763536 LOC107763537
Function* GRAS family transcription factor GRAS family transcription factor scarecrow-like protein 6 scarecrow-like protein 27 GRAS transcriptional regulator HAM GRAS family protein scarecrow-like protein 27 uncharacterized LOC100381701 Scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 22 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma00999 Biosynthesis of various plant secondary metabolites 3
zma02010 ABC transporters 3
zma04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00904 Diterpenoid biosynthesis 2
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi03018 RNA degradation 2
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00650 Butanoate metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828208 825234 100805945 100792973 101252614 104648977 4331304 100381701 100274201 103836942 103862870 100252271 100267664 7480613 7465515 25480239 120575826 123106077 123181605 123406350 123412246 107945536 107945538 106353214 106391896 8067884 8058755 102602862 102606202 102610953 102611258 100828697 100834684 107763536 107763537
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