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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102620269   uncharacterized LOC102620269 
 ath-u.5   AT5G41770   crooked neck protein, putative / cell cycle protein 
 bra-r.6   103864120   crooked neck-like protein 1 
 bra-r.6   103850228   crooked neck-like protein 1 
 ghi-r.1   107924173   crooked neck-like protein 1 
 ghi-r.1   107904473   crooked neck-like protein 1 
 bna-r.1   106446317   crooked neck-like protein 1 
 bna-r.1   106440929   crooked neck-like protein 1 
 bna-r.1   106406050   crooked neck-like protein 1 
 gma-u.5   100811745   crooked neck-like protein 1 
 gma-u.5   100791616   crooked neck-like protein 1 
 vvi-u.5   100255371   crooked neck-like protein 1 
 ppo-u.5   7458229   uncharacterized LOC7458229 
 ppo-u.5   7479272   uncharacterized LOC7479272 
 mtr-u.5   11426099   crooked neck-like protein 1 
 mtr-u.5   11439028   crooked neck-like protein 1 
 sly-u.5   101245441   uncharacterized LOC101245441 
 sly-u.5   101257538   uncharacterized LOC101257538 
 sot-r.1   102604573   crooked neck-like protein 1 
 sot-r.1   102594042   crooked neck-like protein 1 
 nta-r.1   107781942   uncharacterized LOC107781942 
 nta-r.1   107790486   uncharacterized LOC107790486 
 osa-u.5   4338298   uncharacterized LOC4338298 
 zma-u.5   103643760   crooked neck-like protein 1 
 tae-r.2   123147940   crooked neck-like protein 1 
 tae-r.2   123155830   crooked neck-like protein 1 
 tae-r.2   123163807   crooked neck-like protein 1 
 hvu-r.1   123413606   crooked neck-like protein 1 
 sbi-r.1   8076963   crooked neck-like protein 1 
 sbi-r.1   8054178   crooked neck-like protein 1 
 bdi-r.1   100829074   crooked neck-like protein 1 
 cre-r.1   CHLRE_14g621000v5   uncharacterized protein 

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Top 50 coexpressed genes to 102620269 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102620269 (cit-r.1 coexpression data)

CoexMap"102612583"


citLOC102612583 | Entrez gene ID : 102612583    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 2 2 3 2 1 2 2 2 2 2 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03040 [list] [network] Spliceosome (220 genes)
GO BP
GO:0000245 [list] [network] spliceosomal complex assembly  (16 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (155 genes)  IEA  
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (6 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (13 genes)  IEA  
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (18 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (34 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006483329.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  chlo_mito 2,  mito 1,  nucl 1  (predict for XP_006483329.2)
Subcellular
localization
TargetP
mito 5,  other 5  (predict for XP_006483329.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102620269
ath-u.5
for
AT5G41770
bra-r.6
for
103864120
bra-r.6
for
103850228
ghi-r.1
for
107924173
ghi-r.1
for
107904473
bna-r.1
for
106446317
bna-r.1
for
106440929
bna-r.1
for
106406050
gma-u.5
for
100811745
gma-u.5
for
100791616
vvi-u.5
for
100255371
ppo-u.5
for
7458229
ppo-u.5
for
7479272
mtr-u.5
for
11426099
mtr-u.5
for
11439028
sly-u.5
for
101245441
sly-u.5
for
101257538
sot-r.1
for
102604573
sot-r.1
for
102594042
nta-r.1
for
107781942
nta-r.1
for
107790486
osa-u.5
for
4338298
zma-u.5
for
103643760
tae-r.2
for
123147940
tae-r.2
for
123155830
tae-r.2
for
123163807
hvu-r.1
for
123413606
sbi-r.1
for
8076963
sbi-r.1
for
8054178
bdi-r.1
for
100829074
cre-r.1
for
CHLRE_14g621000v5


Ortholog ID: 5736
Species cit ath bra bra ghi ghi bna bna bna gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC102620269 AT5G41770 LOC103864120 LOC103850228 LOC107924173 LOC107904473 LOC106440929 LOC106406050 LOC125576576 LOC100811745 LOC100791616 LOC100255371 LOC7458229 LOC7479272 LOC11426099 LOC11439028 LOC101245441 LOC101257538 LOC102604573 LOC102594042 LOC107781942 LOC107790486 LOC4338298 LOC103643760 LOC123147940 LOC123155830 LOC123163807 LOC123413606 LOC8076963 LOC8054178 LOC100829074 CHLRE_14g621000v5
Function* uncharacterized LOC102620269 crooked neck protein, putative / cell cycle protein crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC7458229 uncharacterized LOC7479272 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC101245441 uncharacterized LOC101257538 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC107781942 uncharacterized LOC107790486 uncharacterized LOC4338298 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma00970 Aminoacyl-tRNA biosynthesis 4
gma03015 mRNA surveillance pathway 3
gma03022 Basal transcription factors 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03040 Spliceosome 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102620269 834182 103864120 103850228 107924173 107904473 106440929 106406050 125576576 100811745 100791616 100255371 7458229 7479272 11426099 11439028 101245441 101257538 102604573 102594042 107781942 107790486 4338298 103643760 123147940 123155830 123163807 123413606 8076963 8054178 100829074 5715897
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