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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102624769   tryptophan--tRNA ligase, cytoplasmic 
 ath-u.5   AT3G04600   Nucleotidylyl transferase superfamily protein 
 bra-r.6   103859044   tryptophan--tRNA ligase, cytoplasmic 
 ghi-r.1   121206146   tryptophan--tRNA ligase, cytoplasmic 
 ghi-r.1   107891513   tryptophan--tRNA ligase, cytoplasmic 
 bna-r.1   106365663   tryptophan--tRNA ligase, cytoplasmic-like 
 bna-r.1   106438983   tryptophan--tRNA ligase, cytoplasmic 
 gma-u.5   100798713   tryptophan--tRNA ligase, cytoplasmic 
 gma-u.5   100787194   tryptophan--tRNA ligase, cytoplasmic 
 vvi-u.5   100257528   tryptophan--tRNA ligase, cytoplasmic 
 ppo-u.5   7478581   tryptophan--tRNA ligase, cytoplasmic 
 mtr-u.5   25500099   tryptophan--tRNA ligase, cytoplasmic 
 sly-u.5   101246271   tryptophan--tRNA ligase, cytoplasmic 
 sot-r.1   102589250   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107769302   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107832588   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107797175   tryptophan--tRNA ligase, cytoplasmic-like 
 osa-u.5   4352435   tryptophan--tRNA ligase, cytoplasmic 
 zma-u.5   100282419   uncharacterized LOC100282419 
 tae-r.2   123169058   tryptophan--tRNA ligase, cytoplasmic 
 tae-r.2   123159854   tryptophan--tRNA ligase, cytoplasmic 
 hvu-r.1   123396106   tryptophan--tRNA ligase, cytoplasmic 
 hvu-r.1   123444651   tryptophan--tRNA ligase, cytoplasmic-like 
 sbi-r.1   8066308   tryptophan--tRNA ligase, cytoplasmic 
 bdi-r.1   100838621   tryptophan--tRNA ligase, cytoplasmic 
 cre-r.1   CHLRE_12g522350v5   aminoacyl-tRNA ligase 

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Top 50 coexpressed genes to 102624769 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102624769 (cit-r.1 coexpression data)

CoexMap"102624769"


citLOC102624769 | Entrez gene ID : 102624769    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 2 2 2 1 1 1 1 1 3 1 1 2 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00970 [list] [network] Aminoacyl-tRNA biosynthesis (466 genes)
GO BP
GO:0006436 [list] [network] tryptophanyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4272 genes)  IEA  
GO MF
GO:0004830 [list] [network] tryptophan-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1864 genes)  IEA  
Protein XP_006476011.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_006476011.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006476011.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102624769
ath-u.5
for
AT3G04600
bra-r.6
for
103859044
ghi-r.1
for
121206146
ghi-r.1
for
107891513
bna-r.1
for
106365663
bna-r.1
for
106438983
gma-u.5
for
100798713
gma-u.5
for
100787194
vvi-u.5
for
100257528
ppo-u.5
for
7478581
mtr-u.5
for
25500099
sly-u.5
for
101246271
sot-r.1
for
102589250
nta-r.1
for
107769302
nta-r.1
for
107832588
nta-r.1
for
107797175
osa-u.5
for
4352435
zma-u.5
for
100282419
tae-r.2
for
123169058
tae-r.2
for
123159854
hvu-r.1
for
123396106
hvu-r.1
for
123444651
sbi-r.1
for
8066308
bdi-r.1
for
100838621
cre-r.1
for
CHLRE_12g522350v5


Ortholog ID: 5497
Species cit ath bra ghi ghi bna bna gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC102624769 AT3G04600 LOC103859044 LOC121206146 LOC107891513 LOC106438983 LOC106447633 LOC100798713 LOC100787194 LOC100257528 LOC7478581 LOC25500099 LOC101246271 LOC102589250 LOC107769302 LOC107832588 LOC107797175 LOC4352435 LOC100282419 LOC123169058 LOC123159854 LOC123110812 LOC123396106 LOC123444651 LOC8066308 LOC100838621 CHLRE_12g522350v5
Function* tryptophan--tRNA ligase, cytoplasmic Nucleotidylyl transferase superfamily protein tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like tryptophan--tRNA ligase, cytoplasmic uncharacterized LOC100282419 tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic aminoacyl-tRNA ligase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra00020 Citrate cycle (TCA cycle) 6
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00270 Cysteine and methionine metabolism 3
bra00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03040 Spliceosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 4
bdi04145 Phagosome 3
bdi04142 Lysosome 2
bdi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 8
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre00970 Aminoacyl-tRNA biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102624769 819617 103859044 121206146 107891513 106438983 106447633 100798713 100787194 100257528 7478581 25500099 101246271 102589250 107769302 107832588 107797175 4352435 100282419 123169058 123159854 123110812 123396106 123444651 8066308 100838621 5722559
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