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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478581   tryptophan--tRNA ligase, cytoplasmic 
 ppo-r.4   7478581   tryptophan--tRNA ligase, cytoplasmic 
 ppo-m.4   7478581   tryptophan--tRNA ligase, cytoplasmic 
 gma-u.5   100798713   tryptophan--tRNA ligase, cytoplasmic 
 gma-u.5   100787194   tryptophan--tRNA ligase, cytoplasmic 
 mtr-u.5   25500099   tryptophan--tRNA ligase, cytoplasmic 
 ath-u.5   AT3G04600   Nucleotidylyl transferase superfamily protein 
 vvi-u.5   100257528   tryptophan--tRNA ligase, cytoplasmic 
 sly-u.5   101246271   tryptophan--tRNA ligase, cytoplasmic 
 osa-u.5   4352435   tryptophan--tRNA ligase, cytoplasmic 
 zma-u.5   100282419   uncharacterized LOC100282419 

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Top 50 coexpressed genes to 7478581 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478581 (ppo-u.5 coexpression data)

CoexMap"7478581"


ppoLOC7478581 | Entrez gene ID : 7478581    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00970 [list] [network] Aminoacyl-tRNA biosynthesis (96 genes)
GO BP
GO:0006436 [list] [network] tryptophanyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004830 [list] [network] tryptophan-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002312840.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 6,  nucl 1,  mito 1,  pero 1  (predict for XP_002312840.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002312840.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478581

.
ppo-r.4
for
7478581

.
ppo-m.4
for
7478581

.
gma-u.5
for
100798713

.
gma-u.5
for
100787194

.
mtr-u.5
for
25500099

.
ath-u.5
for
AT3G04600

.
vvi-u.5
for
100257528

.
sly-u.5
for
101246271

.
osa-u.5
for
4352435

.
zma-u.5
for
100282419

.


Ortholog ID: 5497
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT3G04600 LOC100798713 LOC100787194 LOC101246271 LOC4352435 LOC100282419 LOC103859044 LOC100257528 LOC7478581 LOC25500099 LOC123169058 LOC123159854 LOC123396106 LOC123444651 LOC107891513 LOC121206146 LOC106447633 CHLRE_12g522350v5 LOC8066308 LOC102589250 LOC102624769 LOC100838621 LOC107832588 LOC107797175
Function* Nucleotidylyl transferase superfamily protein tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic uncharacterized LOC100282419 tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic aminoacyl-tRNA ligase tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra00020 Citrate cycle (TCA cycle) 6
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00270 Cysteine and methionine metabolism 3
bra00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03040 Spliceosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 8
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre00970 Aminoacyl-tRNA biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 4
bdi04145 Phagosome 3
bdi04142 Lysosome 2
bdi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819617 100798713 100787194 101246271 4352435 100282419 103859044 100257528 7478581 25500099 123169058 123159854 123396106 123444651 107891513 121206146 106447633 5722559 8066308 102589250 102624769 100838621 107832588 107797175
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